Transcript: Mouse NM_029098.3

Mus musculus limb region 1 like (Lmbr1l), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Lmbr1l (74775)
Length:
2167
CDS:
178..1647

Additional Resources:

NCBI RefSeq record:
NM_029098.3
NBCI Gene record:
Lmbr1l (74775)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029098.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000126110 CGCGAGTGCATCATCTCAATA pLKO.1 238 CDS 100% 13.200 18.480 N Lmbr1l n/a
2 TRCN0000126111 GCATCCGCCATTGTAGACAAT pLKO.1 691 CDS 100% 4.950 6.930 N Lmbr1l n/a
3 TRCN0000126113 CGCTTCAACTGGCTAGGCAAT pLKO.1 1453 CDS 100% 4.050 5.670 N Lmbr1l n/a
4 TRCN0000305557 CTCTACATCCTCTGCCATATC pLKO_005 274 CDS 100% 10.800 8.640 N Lmbr1l n/a
5 TRCN0000305607 ATCCAGGTTGTGCTGATATTT pLKO_005 1240 CDS 100% 15.000 10.500 N Lmbr1l n/a
6 TRCN0000305559 CATCGATGACACAGATCATTG pLKO_005 1337 CDS 100% 10.800 7.560 N Lmbr1l n/a
7 TRCN0000305605 GCAGCTCTGACTCGAAGAATC pLKO_005 922 CDS 100% 10.800 7.560 N Lmbr1l n/a
8 TRCN0000126109 GCCATGTTTACATGATTTGAT pLKO.1 1942 3UTR 100% 5.625 3.938 N Lmbr1l n/a
9 TRCN0000353810 GCCATGTTTACATGATTTGAT pLKO_005 1942 3UTR 100% 5.625 3.938 N Lmbr1l n/a
10 TRCN0000126112 CTCGTCTTCCTTATGCCCTTT pLKO.1 547 CDS 100% 4.050 2.835 N Lmbr1l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029098.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08568 pDONR223 100% 89.7% 95.5% None (many diffs) n/a
2 ccsbBroad304_08568 pLX_304 0% 89.7% 95.5% V5 (many diffs) n/a
3 TRCN0000478741 TACAGCTGCTGTGGGTCAATCCGC pLX_317 18.4% 89.7% 95.5% V5 (many diffs) n/a
4 ccsbBroadEn_15910 pDONR223 0% 89.7% 95.5% None (many diffs) n/a
5 ccsbBroad304_15910 pLX_304 0% 89.7% 95.5% V5 (many diffs) n/a
6 TRCN0000469583 TTCAGCGCCCAATACCCGCTGGTA pLX_317 29.9% 89.7% 95.5% V5 (many diffs) n/a
7 ccsbBroadEn_12258 pDONR223 100% 86.2% 92.2% None (many diffs) n/a
8 ccsbBroad304_12258 pLX_304 0% 86.2% 92.2% V5 (many diffs) n/a
9 TRCN0000480182 TGTGATTCGCAGACCTGGGCTGCC pLX_317 23.8% 86.2% 92.2% V5 (many diffs) n/a
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