Transcript: Human NR_001562.2

Homo sapiens annexin A2 pseudogene 1 (ANXA2P1), non-coding RNA.

Source:
NCBI, updated 2018-05-12
Taxon:
Homo sapiens (human)
Gene:
ANXA2P1 (303)
Length:
1343
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_001562.2
NBCI Gene record:
ANXA2P1 (303)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_001562.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056144 GCAGGAAATTAACAGAGTCTA pLKO.1 467 3UTR 100% 4.950 2.475 Y ANXA2 n/a
2 TRCN0000289717 GCAGGAAATTAACAGAGTCTA pLKO_005 467 3UTR 100% 4.950 2.475 Y ANXA2 n/a
3 TRCN0000056146 CCAGAAAGTATTTGATAGGTA pLKO.1 722 3UTR 100% 3.000 1.500 Y ANXA2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_001562.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488206 GGGGAAACCTCAGCTGTGATCTAA pLX_317 29% 70.5% V5 (many diffs) n/a
2 TRCN0000491537 ATGCTAGCTATTGCAATTGCTAGA pLX_317 31.3% 70.5% V5 (not translated due to prior stop codon) (many diffs) n/a
3 ccsbBroadEn_05825 pDONR223 100% 68.7% None (many diffs) n/a
4 ccsbBroad304_05825 pLX_304 0% 68.7% V5 (many diffs) n/a
5 TRCN0000481142 GTGTACGCTCCACGTCAGGCGAGA pLX_317 40.9% 68.7% V5 (many diffs) n/a
6 ccsbBroadEn_05823 pDONR223 100% 68.7% None (many diffs) n/a
7 ccsbBroad304_05823 pLX_304 0% 68.7% V5 (many diffs) n/a
8 TRCN0000469148 TGGACGTAATTCCCTTTGCCTTGC pLX_317 42.5% 68.7% V5 (many diffs) n/a
9 ccsbBroadEn_05824 pDONR223 100% 68.7% None (many diffs) n/a
10 ccsbBroad304_05824 pLX_304 0% 68.7% V5 (many diffs) n/a
11 TRCN0000473677 GATCTGATTCTTACAGCACTATAG pLX_317 46.4% 68.7% V5 (many diffs) n/a
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