Transcript: Human XM_017007041.1

PREDICTED: Homo sapiens myotubularin related protein 14 (MTMR14), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MTMR14 (64419)
Length:
2218
CDS:
203..1798

Additional Resources:

NCBI RefSeq record:
XM_017007041.1
NBCI Gene record:
MTMR14 (64419)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017007041.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000284873 TTCGATACCTGTCAGTCAAAT pLKO_005 528 CDS 100% 13.200 18.480 N MTMR14 n/a
2 TRCN0000002624 CAAGGAATATAAAGATCGGGA pLKO.1 685 CDS 100% 0.660 0.924 N MTMR14 n/a
3 TRCN0000284885 AGAAGCCAGCCCATGACATTT pLKO_005 1799 CDS 100% 13.200 9.240 N MTMR14 n/a
4 TRCN0000284883 CGGTTTGTCTGCCCAGTAATC pLKO_005 302 CDS 100% 10.800 7.560 N MTMR14 n/a
5 TRCN0000381217 GCCCTTAGCAGAGAATCAAAG pLKO_005 1841 3UTR 100% 10.800 7.560 N MTMR14 n/a
6 TRCN0000381664 TTGGGATCTGGTGCAACAAAC pLKO_005 745 CDS 100% 10.800 7.560 N MTMR14 n/a
7 TRCN0000002623 CGACTTCACTCTCCTCTCCAT pLKO.1 640 CDS 100% 2.640 1.848 N MTMR14 n/a
8 TRCN0000002625 GAAGCATATTACCTCCGAGGA pLKO.1 1036 CDS 100% 2.160 1.512 N MTMR14 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017007041.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03947 pDONR223 100% 81.6% 80.3% None 0_1ins133;26_27ins149;537_538ins75 n/a
2 ccsbBroad304_03947 pLX_304 0% 81.6% 80.3% V5 0_1ins133;26_27ins149;537_538ins75 n/a
3 TRCN0000470894 AGCTTAAAGGCTTCACAACATCTT pLX_317 18.5% 81.6% 80.3% V5 0_1ins133;26_27ins149;537_538ins75 n/a
4 ccsbBroadEn_03948 pDONR223 99.5% 73.6% 72.3% None (many diffs) n/a
5 ccsbBroad304_03948 pLX_304 0% 73.6% 72.3% V5 (many diffs) n/a
6 TRCN0000472308 TTCGGCTATACTGTCGTCTGCGCA pLX_317 28.3% 73.6% 72.3% V5 (many diffs) n/a
7 ccsbBroadEn_15966 pDONR223 0% 70.5% 70.5% None 1_81del;537_538ins75;1077_1412del n/a
8 ccsbBroad304_15966 pLX_304 0% 70.5% 70.5% V5 1_81del;537_538ins75;1077_1412del n/a
9 TRCN0000467037 CCCGTTGAGCGTCTTGCGCTGGGC pLX_317 23.5% 70.5% 70.5% V5 1_81del;537_538ins75;1077_1412del n/a
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