Transcript: Human XM_011520257.3

PREDICTED: Homo sapiens ribonuclease/angiogenin inhibitor 1 (RNH1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RNH1 (6050)
Length:
2220
CDS:
656..2041

Additional Resources:

NCBI RefSeq record:
XM_011520257.3
NBCI Gene record:
RNH1 (6050)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011520257.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049833 GCTGGTCCTGTACGACATTTA pLKO.1 1948 CDS 100% 13.200 18.480 N RNH1 n/a
2 TRCN0000291908 GCTGGTCCTGTACGACATTTA pLKO_005 1948 CDS 100% 13.200 18.480 N RNH1 n/a
3 TRCN0000049834 GTTAGCAACAACGACATCAAT pLKO.1 1184 CDS 100% 5.625 3.938 N RNH1 n/a
4 TRCN0000307830 GTTAGCAACAACGACATCAAT pLKO_005 1184 CDS 100% 5.625 3.938 N RNH1 n/a
5 TRCN0000049837 CATTTACTGGTCTGAGGAGAT pLKO.1 1963 CDS 100% 4.050 2.835 N RNH1 n/a
6 TRCN0000307833 CATTTACTGGTCTGAGGAGAT pLKO_005 1963 CDS 100% 4.050 2.835 N RNH1 n/a
7 TRCN0000049835 CCTGGAGCTACAGATAAGCAA pLKO.1 1684 CDS 100% 3.000 2.100 N RNH1 n/a
8 TRCN0000307828 CCTGGAGCTACAGATAAGCAA pLKO_005 1684 CDS 100% 3.000 2.100 N RNH1 n/a
9 TRCN0000049836 CGCAGCAACGAGCTGGGCGAT pLKO.1 845 CDS 100% 0.000 0.000 N RNH1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011520257.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06871 pDONR223 100% 99.7% 99.7% None 563G>A;570G>A;1239C>G n/a
2 ccsbBroad304_06871 pLX_304 0% 99.7% 99.7% V5 563G>A;570G>A;1239C>G n/a
3 TRCN0000480554 CGCCACACCACTTTAATCCAGGAA pLX_317 32% 99.7% 99.7% V5 563G>A;570G>A;1239C>G n/a
4 ccsbBroadEn_06870 pDONR223 100% 99.5% 99.7% None (many diffs) n/a
5 ccsbBroad304_06870 pLX_304 0% 99.5% 99.7% V5 (many diffs) n/a
6 TRCN0000478952 ACCGATGGTGTCCCGTTAAGTAAC pLX_317 26.1% 99.5% 99.7% V5 (many diffs) n/a
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