Transcript: Human XM_017026750.2

PREDICTED: Homo sapiens zinc finger protein 429 (ZNF429), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF429 (353088)
Length:
5843
CDS:
836..2764

Additional Resources:

NCBI RefSeq record:
XM_017026750.2
NBCI Gene record:
ZNF429 (353088)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026750.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242243 TACCCGGTCTTCAAGACTTAC pLKO_005 2629 CDS 100% 0.000 0.000 N ZNF429 n/a
2 TRCN0000242244 GCTATACAAAGGAGGTTATAA pLKO_005 1111 CDS 100% 15.000 10.500 N ZNF429 n/a
3 TRCN0000257194 TTCAAGACTTACTCGACATAA pLKO_005 1882 CDS 100% 13.200 9.240 N ZNF429 n/a
4 TRCN0000242245 TAATCGGTCCTCAAGACTTAC pLKO_005 2545 CDS 100% 10.800 7.560 N ZNF429 n/a
5 TRCN0000242246 TTAGCATATCCTCAACCTTTA pLKO_005 1620 CDS 100% 10.800 7.560 N ZNF429 n/a
6 TRCN0000428574 CTGAAGAGAAACCCTACAAAT pLKO_005 1662 CDS 100% 13.200 6.600 Y ZNF138 n/a
7 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 1494 CDS 100% 13.200 6.600 Y Zfp934 n/a
8 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 1494 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
9 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 1494 CDS 100% 13.200 6.600 Y EG668616 n/a
10 TRCN0000018502 GATGTTAGAGAACTACAGAAA pLKO.1 835 5UTR 100% 4.950 2.475 Y ZNF493 n/a
11 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2690 CDS 100% 13.200 6.600 Y LIAS n/a
12 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 3189 3UTR 100% 10.800 5.400 Y SMIM11A n/a
13 TRCN0000158848 GAGAAACCTTACAAATGTGAT pLKO.1 2339 CDS 100% 4.950 2.475 Y ZNF28 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026750.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13028 pDONR223 100% 69.8% 61.4% None (many diffs) n/a
2 ccsbBroad304_13028 pLX_304 0% 69.8% 61.4% V5 (many diffs) n/a
3 TRCN0000468257 GTACACCAGACCACTACATGCGAC pLX_317 25.6% 69.8% 61.4% V5 (many diffs) n/a
4 ccsbBroadEn_09784 pDONR223 100% 62.2% 52.6% None (many diffs) n/a
5 ccsbBroad304_09784 pLX_304 0% 62.2% 52.6% V5 (many diffs) n/a
6 TRCN0000478115 ATTTTTATATATACCACTCGGCCC pLX_317 19.7% 62.2% 52.6% V5 (many diffs) n/a
7 ccsbBroadEn_15167 pDONR223 53.6% 61.3% 23.6% None (many diffs) n/a
8 ccsbBroad304_15167 pLX_304 0% 61.3% 23.6% V5 (not translated due to prior stop codon) (many diffs) n/a
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