Transcript: Human XM_024452577.1

PREDICTED: Homo sapiens myotubularin related protein 11 (MTMR11), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MTMR11 (10903)
Length:
2984
CDS:
461..2506

Additional Resources:

NCBI RefSeq record:
XM_024452577.1
NBCI Gene record:
MTMR11 (10903)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024452577.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000113769 GCGGACAGTTAAACTCCTATA pLKO.1 1833 CDS 100% 10.800 15.120 N MTMR11 n/a
2 TRCN0000299153 GCGGACAGTTAAACTCCTATA pLKO_005 1833 CDS 100% 10.800 15.120 N MTMR11 n/a
3 TRCN0000113770 CGTTATAGCAATGCACAGATA pLKO.1 1937 CDS 100% 4.950 6.930 N MTMR11 n/a
4 TRCN0000299203 CGTTATAGCAATGCACAGATA pLKO_005 1937 CDS 100% 4.950 6.930 N MTMR11 n/a
5 TRCN0000113767 GCCAGTGACATTTCAGTATTA pLKO.1 1445 CDS 100% 13.200 9.240 N MTMR11 n/a
6 TRCN0000299155 GCCAGTGACATTTCAGTATTA pLKO_005 1445 CDS 100% 13.200 9.240 N MTMR11 n/a
7 TRCN0000303459 TCCGCTGTGGAGGCTTCTATA pLKO_005 1185 CDS 100% 13.200 9.240 N MTMR11 n/a
8 TRCN0000113768 CCTGGTCAACATTGGACGATT pLKO.1 673 CDS 100% 4.950 3.465 N MTMR11 n/a
9 TRCN0000122879 GAGCAATCAAGCCCAACAGTA pLKO.1 877 CDS 100% 4.950 3.465 N MTMR11 n/a
10 TRCN0000113766 CCCAACAAGATGGCCTAGAAA pLKO.1 2799 3UTR 100% 5.625 3.375 N MTMR11 n/a
11 TRCN0000299202 CCCAACAAGATGGCCTAGAAA pLKO_005 2799 3UTR 100% 5.625 3.375 N MTMR11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024452577.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11568 pDONR223 100% 34.6% 34.3% None (many diffs) n/a
2 ccsbBroad304_11568 pLX_304 0% 34.6% 34.3% V5 (many diffs) n/a
3 TRCN0000466008 GCCGTCTACCAATAGACCACACTT pLX_317 47.4% 34.6% 34.3% V5 (many diffs) n/a
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