Transcript: Human XR_001737158.2

PREDICTED: Homo sapiens ring finger protein 207 (RNF207), transcript variant X3, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RNF207 (388591)
Length:
4368
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001737158.2
NBCI Gene record:
RNF207 (388591)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001737158.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000166586 CGGAATAACAGTCCCACTGTT pLKO.1 3524 3UTR 100% 0.495 0.693 N RNF207 n/a
2 TRCN0000165878 GCAAGAAATCCCTCGCTAGTT pLKO.1 3366 3UTR 100% 4.950 3.960 N RNF207 n/a
3 TRCN0000165654 GCATGTGAGGTCAGGATTCAT pLKO.1 1942 3UTR 100% 5.625 3.938 N RNF207 n/a
4 TRCN0000166814 CCTGCCCTATTGCAAAGGAAT pLKO.1 3493 3UTR 100% 4.950 3.465 N RNF207 n/a
5 TRCN0000165899 GCAGTCAGAGAGTCTACAGAA pLKO.1 2252 3UTR 100% 4.950 3.465 N RNF207 n/a
6 TRCN0000164510 CAATACGAAGAGAAGGACAAG pLKO.1 968 3UTR 100% 4.050 2.835 N RNF207 n/a
7 TRCN0000163918 CCAATACGAAGAGAAGGACAA pLKO.1 967 3UTR 100% 4.050 2.835 N RNF207 n/a
8 TRCN0000165461 GAGCCAATACGAAGAGAAGGA pLKO.1 964 3UTR 100% 2.640 1.848 N RNF207 n/a
9 TRCN0000165247 GCAGAGCCAATACGAAGAGAA pLKO.1 961 3UTR 100% 4.950 2.970 N RNF207 n/a
10 TRCN0000165050 GCTGGAGTGTAATGGTGCAAT pLKO.1 2614 3UTR 100% 4.950 2.475 Y RNF207 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001737158.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10792 pDONR223 100% 4.9% None (many diffs) n/a
2 ccsbBroad304_10792 pLX_304 0% 4.9% V5 (many diffs) n/a
3 TRCN0000472287 GCCTGGAGAGCTTTCCTCGTCACG pLX_317 100% 4.9% V5 (many diffs) n/a
4 ccsbBroadEn_12783 pDONR223 100% 4.3% None (many diffs) n/a
5 ccsbBroad304_12783 pLX_304 0% 4.3% V5 (many diffs) n/a
6 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 4.3% V5 (many diffs) n/a
7 ccsbBroadEn_10261 pDONR223 100% 1.4% None (many diffs) n/a
8 ccsbBroad304_10261 pLX_304 0% 1.4% V5 (many diffs) n/a
9 TRCN0000492083 TTATAGGCCCAGAGCACTACCAAC pLX_317 100% 1.4% V5 (many diffs) n/a
Download CSV