Transcript: Human XR_938771.1

PREDICTED: Homo sapiens glutathione S-transferase C-terminal domain containing (GSTCD), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GSTCD (79807)
Length:
1986
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_938771.1
NBCI Gene record:
GSTCD (79807)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_938771.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000158776 GCTGTTGTATTGAGACACATA pLKO.1 576 3UTR 100% 4.950 6.930 N GSTCD n/a
2 TRCN0000162277 CTCAACTGAACAGCATCCAAA pLKO.1 1304 3UTR 100% 4.950 3.960 N GSTCD n/a
3 TRCN0000230798 CCATCATGTCAGGTTACATTA pLKO_005 1650 3UTR 100% 13.200 9.240 N GSTCD n/a
4 TRCN0000230796 CTTGCCCTGTATCCATCATTT pLKO_005 1130 3UTR 100% 13.200 9.240 N GSTCD n/a
5 TRCN0000159953 GTTATCTTACTGTGACTGTAA pLKO.1 371 3UTR 100% 4.950 3.465 N GSTCD n/a
6 TRCN0000160951 GTGGTAACAAATCAGGCCAAA pLKO.1 1560 3UTR 100% 4.050 2.835 N GSTCD n/a
7 TRCN0000166574 CCTCAACTGAACAGCATCCAA pLKO.1 1303 3UTR 100% 3.000 2.100 N GSTCD n/a
8 TRCN0000160607 CCTGTAGAAATACTACAGCTA pLKO.1 777 3UTR 100% 0.264 0.185 N GSTCD n/a
9 TRCN0000230797 ACCAACCATGGCCAAGTTAAT pLKO_005 1385 3UTR 100% 13.200 7.920 N GSTCD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_938771.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12622 pDONR223 100% 71.3% None (many diffs) n/a
2 ccsbBroad304_12622 pLX_304 0% 71.3% V5 (many diffs) n/a
3 TRCN0000471538 AAGCAACTATGAACTGCCATCCGA pLX_317 24.9% 71.3% V5 (many diffs) n/a
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