Construct: ORF TRCN0000465897
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011711.1_s317c1
- Derived from:
- ccsbBroadEn_12729
- DNA Barcode:
- CCCGCAATCACAACGATCTCAAAA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF611 (81856)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000465897
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 107987264 | LOC107987264 | putative zinc finger protei... | XR_002958390.1 | 43.4% | (many diffs) | |
| 2 | human | 7696 | ZNF137P | zinc finger protein 137, ps... | NR_023311.1 | 16.4% | (many diffs) | |
| 3 | human | 79986 | ZNF702P | zinc finger protein 702, ps... | NR_003578.1 | 12.9% | (many diffs) | |
| 4 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 10.8% | (many diffs) | |
| 5 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 10.2% | (many diffs) | |
| 6 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 9.5% | (many diffs) | |
| 7 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 9.1% | (many diffs) | |
| 8 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 8.6% | (many diffs) | |
| 9 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 8.4% | (many diffs) | |
| 10 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 8.4% | (many diffs) | |
| 11 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 8.1% | (many diffs) | |
| 12 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145445.2 | 7.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 519
- ORF length:
- 453
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct acaacgatta caaatcattg gagaatccat aatgaagaga gatcttacaa 121 gtgtaataaa tgtggcaaat ttttcagaga tcgttcacat attgcaggtc atcggtgaac 181 tcatactgga gagaaaCCTT ACAAATGTCA TGACTGTGCC AAGGTCTTCA GTCAAGCTTC 241 ATCCTATGCA AAACATAGGA GAATTTATAC AGGAGAGAAA CCTCACAAGT GTGATGATTG 301 TGGCAAAGCC TTTGCTTCAC GTTCACACGT CATTAGACAT CAGAGAATCT ATACTGGACA 361 GAAATCTTAC AAATGTCATC AGTGTGGCAA GGTCTTCAGT CCAAGATCAC TCCATGCAGA 421 ACATCAGAAA ATTCATTTTT GAGATAACCG TTCCCAATGA AATGAGTATA GCAAACCATC 481 AAGCATTAAT TGACATTGGA GTCAATTCAG CATTGACTTG CCCAACTTTC TTGTACAAAG 541 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 601 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 661 ACGACCCGCA ATCACAACGA TCTCAAAAAC GCGTTAAGTC gacaatcaac ctctggatta 721 caaaatttgt gaaagatt