Construct: ORF TRCN0000467573

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002686.1_s317c1
Derived from:
ccsbBroadEn_01604
DNA Barcode:
GAGGTGCGGTAGTGGCTGTCGGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SSX1 (6756)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467573
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6756 SSX1 SSX family member 1 NM_001278691.2 100% 100%
2 human 6756 SSX1 SSX family member 1 NM_005635.4 100% 100%
3 human 548313 SSX4B SSX family member 4B NM_001034832.3 89.5% 79.2% (many diffs)
4 human 6759 SSX4 SSX family member 4 NM_005636.4 89.5% 79.2% (many diffs)
5 human 548313 SSX4B SSX family member 4B XM_017029613.1 89.5% 79.2% (many diffs)
6 human 6759 SSX4 SSX family member 4 XM_017029759.1 89.5% 79.2% (many diffs)
7 human 10214 SSX3 SSX family member 3 NM_021014.4 89.5% 77.6% (many diffs)
8 human 280658 SSX7 SSX family member 7 NM_173358.2 89.3% 79.2% (many diffs)
9 human 727837 SSX2B SSX family member 2B NM_001164417.3 89.2% 78.1% (many diffs)
10 human 6757 SSX2 SSX family member 2 NM_175698.2 89.2% 78.1% (many diffs)
11 human 6758 SSX5 SSX family member 5 NM_175723.1 89.2% 77.1% (many diffs)
12 human 6758 SSX5 SSX family member 5 XM_011543949.2 89.2% 77.1% (many diffs)
13 human 6758 SSX5 SSX family member 5 XM_017029758.2 89.2% 77.1% (many diffs)
14 human 6757 SSX2 SSX family member 2 NM_001278697.1 78.4% 68.6% (many diffs)
15 human 727837 SSX2B SSX family member 2B NM_001278702.2 78.4% 68.6% (many diffs)
16 human 10214 SSX3 SSX family member 3 XM_011543885.2 77.7% 58.2% (many diffs)
17 human 280658 SSX7 SSX family member 7 XM_017029430.1 75.4% 66.8% (many diffs)
18 human 6758 SSX5 SSX family member 5 NM_021015.4 74.3% 63.3% (many diffs)
19 human 548313 SSX4B SSX family member 4B NM_001040612.2 65.3% 42.6% (many diffs)
20 human 6759 SSX4 SSX family member 4 NM_175729.1 65.3% 42.6% (many diffs)
21 human 727837 SSX2B SSX family member 2B NM_001278701.2 65.3% 47.9% (many diffs)
22 human 6757 SSX2 SSX family member 2 NM_003147.5 65.3% 47.9% (many diffs)
23 human 280658 SSX7 SSX family member 7 XM_017029431.1 61.4% 44.1% (many diffs)
24 human 280657 SSX6P SSX family member 6, pseudo... NR_028366.1 40.2% (many diffs)
25 human 280659 SSX8P SSX family member 8, pseudo... NR_027250.2 37.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
633
ORF length:
564
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaacggagac gacacctttg caaagagacc cagggatgat gctaaagcat
121cagagaagag aagcaaggCC TTTGATGATA TTGCCACATA CTTCTCTAAG AAAGAGTGGA
181AAAAGATGAA ATACTCGGAG AAAATCAGCT ATGTGTATAT GAAGAGAAAC TATAAGGCCA
241TGACTAAACT AGGTTTCAAA GTCACCCTCC CACCTTTCAT GTGTAATAAA CAGGCCACAG
301ACTTCCAGGG GAATGATTTT GATAATGACC ATAACCGCAG GATTCAGGTT GAACATCCTC
361AGATGACTTT CGGCAGGCTC CACAGAATCA TCCCGAAGAT CATGCCCAAG AAGCCAGCAG
421AGGACGAAAA TGATTCGAAG GGAGTGTCAG AAGCATCTGG CCCACAAAAC GATGGGAAAC
481AACTGCACCC CCCAGGAAAA GCAAATATTT CTGAGAAGAT TAATAAGAGA TCTGGACCCA
541AAAGGGGGAA ACATGCCTGG ACCCACAGAC TGCGTGAGAG AAAGCAGCTG GTGATTTATG
601AAGAGATCAG TGACCCTGAG GAAGATGACG AGTTGCCAAC TTTCTTGTAC AAAGTGGTTG
661ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
721GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGA
781GGTGCGGTAG TGGCTGTCGG ACACGCGTTA AGTCgacaat caacctctgg attacaaaat
841ttgtgaaaga tt

Download FASTA (ORF) (Full)