Construct: ORF TRCN0000469836
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008530.1_s317c1
- Derived from:
- ccsbBroadEn_03960
- DNA Barcode:
- CGAATATCTAATGCTCGTTTGACG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTAGE1 (64693)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469836
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64693 | CTAGE1 | cutaneous T cell lymphoma-a... | NM_172241.3 | 99.9% | 100% | 2022A>G |
| 2 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354148.1 | 90.6% | 84.9% | (many diffs) |
| 3 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354137.1 | 90.1% | 85.1% | (many diffs) |
| 4 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354138.1 | 90.1% | 85.1% | (many diffs) |
| 5 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_203356.2 | 90.1% | 85.1% | (many diffs) |
| 6 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021317.2 | 88.5% | 83.6% | (many diffs) |
| 7 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021318.1 | 88.5% | 83.6% | (many diffs) |
| 8 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021319.1 | 88.5% | 83.6% | (many diffs) |
| 9 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021330.1 | 88.5% | 83.6% | (many diffs) |
| 10 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_203354.3 | 88.2% | 83.3% | (many diffs) |
| 11 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354150.2 | 87.5% | 82.7% | (many diffs) |
| 12 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354154.2 | 87.3% | 81.8% | (many diffs) |
| 13 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_011536778.2 | 87.2% | 82.3% | (many diffs) |
| 14 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_005930.4 | 86.9% | 82% | (many diffs) |
| 15 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354147.1 | 86.8% | 81.9% | (many diffs) |
| 16 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021316.1 | 86.6% | 81.8% | (many diffs) |
| 17 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001247989.1 | 86.3% | 81.5% | (many diffs) |
| 18 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021315.2 | 86% | 81.2% | (many diffs) |
| 19 | human | 643854 | CTAGE9 | CTAGE family member 9 | NM_001145659.1 | 85.9% | 75.1% | (many diffs) |
| 20 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354151.2 | 85.9% | 81.1% | (many diffs) |
| 21 | human | 100142659 | CTAGE8 | CTAGE family member 8 | NM_001278507.1 | 85.8% | 75.1% | (many diffs) |
| 22 | human | 100128553 | CTAGE4 | CTAGE family member 4 | NM_198495.2 | 85.8% | 74.9% | (many diffs) |
| 23 | human | 441294 | CTAGE15 | CTAGE family member 15 | NM_001008747.2 | 85.7% | 75.1% | (many diffs) |
| 24 | human | 340307 | CTAGE6 | CTAGE family member 6 | NM_178561.5 | 85.6% | 74.9% | (many diffs) |
| 25 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021314.1 | 85.4% | 80.6% | (many diffs) |
| 26 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001247988.1 | 84.9% | 80.1% | (many diffs) |
| 27 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354139.1 | 84.9% | 80.1% | (many diffs) |
| 28 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354140.2 | 84.4% | 79.8% | (many diffs) |
| 29 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354141.2 | 84.4% | 79.8% | (many diffs) |
| 30 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_011536785.2 | 84.4% | 79.8% | (many diffs) |
| 31 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001247990.2 | 83.9% | 79.3% | (many diffs) |
| 32 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354157.2 | 83.7% | 78.9% | (many diffs) |
| 33 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354146.2 | 83% | 78.4% | (many diffs) |
| 34 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021323.1 | 82.9% | 78.4% | (many diffs) |
| 35 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021324.2 | 82.9% | 78.4% | (many diffs) |
| 36 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_024449598.1 | 82.9% | 78.4% | (many diffs) |
| 37 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354155.2 | 82.1% | 76.9% | (many diffs) |
| 38 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_203355.3 | 81.8% | 77.2% | (many diffs) |
| 39 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354149.1 | 81.5% | 76.9% | (many diffs) |
| 40 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354156.2 | 81.1% | 76.6% | (many diffs) |
| 41 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354152.2 | 80.9% | 76.3% | (many diffs) |
| 42 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354145.2 | 79.4% | 74.4% | (many diffs) |
| 43 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354142.1 | 79.2% | 74.8% | (many diffs) |
| 44 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354143.1 | 79.2% | 74.8% | (many diffs) |
| 45 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354144.2 | 79.2% | 74.8% | (many diffs) |
| 46 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_017021327.1 | 79.2% | 74.8% | (many diffs) |
| 47 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001354153.2 | 78.6% | 74.1% | (many diffs) |
| 48 | human | 112268382 | LOC112268382 | cTAGE family member 4-like | XR_002959124.1 | 76.4% | (many diffs) | |
| 49 | human | 647288 | CTAGE11P | CTAGE family member 11, pse... | NR_027466.1 | 75% | (many diffs) | |
| 50 | human | 119437 | CTAGE7P | CTAGE family member 7, pseu... | NR_044994.1 | 72.1% | (many diffs) | |
| 51 | human | 220429 | CTAGE10P | CTAGE family member 10, pse... | NR_003268.3 | 69.8% | (many diffs) | |
| 52 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NR_148723.2 | 57.7% | (many diffs) | |
| 53 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NR_148722.2 | 57.1% | (many diffs) | |
| 54 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NR_148721.1 | 55.6% | (many diffs) | |
| 55 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | NM_001329214.3 | 49.4% | 46.7% | (many diffs) |
| 56 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_024449594.1 | 49.3% | 46.5% | (many diffs) |
| 57 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_024449593.1 | 49.1% | 46.4% | (many diffs) |
| 58 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_024449592.1 | 49% | 46.2% | (many diffs) |
| 59 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_024449596.1 | 46.6% | 43.9% | (many diffs) |
| 60 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_024449595.1 | 46.1% | 43.5% | (many diffs) |
| 61 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XR_002957555.1 | 37% | (many diffs) | |
| 62 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XM_024449597.1 | 36.6% | 33.2% | (many diffs) |
| 63 | human | 4253 | MIA2 | MIA SH3 domain ER export fa... | XR_002957554.1 | 21.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2301
- ORF length:
- 2235
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag acccgattct catccttatg gttttccatg ggaattggtg atacgtgcag 121 ctgttgctgg attttttgct gttctcttct tgtggagaag ttttagatca gttacgagtc 181 ggctttatgt gagaagagag aaaaagtttg ctgtggcact ttctggacta attgaagaaa 241 aatgtaaact acttgaaaaa tttagccttg ttcaaaaaga gtatgaaggc tatgaagtag 301 agtcatcttt aaagaatgcc agctttgaga aggaggcaac agaagcacaa agtttggagg 361 caacctgcga aaagctgaac aggttcaatt ctgaacttgt gcatgaaata ctctgtctag 421 aaaaagagtt aaaagaagag aaatctaaac attctgaaca aaatgaattg atggcggata 481 tttccaaaag gatacagtcg ctagaagatg agtcaaaatc cctcaaatca caagtagctg 541 aagccaaaat gaccttcaag agatttcaag cgaatgaaga acggttggag atagaaatac 601 aagatgcttg gaaagaaaat tctgaacttc aggaaagcca gaaacagctt ttgcaagaag 661 ctgaagtatg gaaagaacaa gtgagtgaac ttattaaaca gaaaagaaca tttgaagact 721 ccaaagtaca tgcagaacaa gttctaaatg ataaagaaaa tcacatcaag actctgactg 781 aacgcttgct aaagatgaaa gatggggttg ctatgcttga agaagatgta acggatgatg 841 ataacttgga attagaaatg aacagtgaat cggaagatgg tgcttactta gataatcctc 901 caaaaggagc tttgaagaaa ctgattcatg ctgctaagtt aaatgcttcc ttaaaaacct 961 tagaaggaga aagaaaccaa atttatattc aattatctga agttgataaa acaaaggaag 1021 agcttacaga gcatattaaa aatcttcaga ctgaacaagc atctttgcag tcagaaaaca 1081 cacattttga aagtgagaat cagaagcttc agcagaaact taaagtaatg actgaattat 1141 atcaagaaaa tgaaatgaaa ctctacagga aattaatagt agaggaaaaa tgccggttag 1201 agaaagaaga gaaactttct aaagtagacg aaatgatcag ccatgccact gaagagctgg 1261 agacctaccg aaagcgagcc aaagatctta aagaatttga gaaaactatt catttttatc 1321 aaaagaagat tattctccat gagaaaaaag cacatgataa ttggtcggca gcttggactg 1381 ctgaaagaaa cctcaatgat ttaaggaaag aaaatgctca caacagacaa aaattaactg 1441 aaatagagtt taaaataaaa cttttagaaa aagatcctta tggacttgat gttccaaata 1501 cagcatttgg cagacagcat tccccatatg gtccctcacc attgggttgg ccttcatctg 1561 aaacgagagc ttctctctat cctccaactt tgttggaagg tcctctcaga ctctcacctt 1621 tgcttccacg gggaggagga agaggctcca gaggcccagg gaatcctccg gaccatcaga 1681 ttaccaaaga aagaggagaa tcaagctgtg ataggttaac tgatcctcac agggctcctt 1741 ctgacgctgg gcccctggca cctccgtggg aacaggacta taggatgatg tttcctccac 1801 caggacaatc atatcctgat tcagctctcc ctccacaaag gcaagacaga ttttattcta 1861 attgtgctag actctctgga ccagcagaac tcagaagttt taatatgcct tctttggata 1921 aaatGGATGG GTCAATGCCT TCAGAAATGG AATCCAGTAG AAATGATACC AAAGATAATC 1981 TTGGTAATTT AAAGGTGCCT GATTCATCTC TCCCCGCTGA AAATGAAGCA ACTGGCCCTG 2041 GCTTTGTTCC TCCACCTCTT GCTCCAATCA GAGGTTTATT GTTTCCGGTA GATACAAGGG 2101 GCCCGTTCAT AAGAAGAGGA CCTCCTTTCC CCCCACCTCC TCCAGGAACC GTGTTTGGAG 2161 CTTCTCCAGA TTATTTTTCT CCAAGGGATG TCCCAGGTCC ACCACGTGCT CCATTTGCAA 2221 TGAGAAATGT CTATTTACCG AGAGGTTTTC TTCCTTACCG TCCCCCAAGA CCTGCATTTT 2281 TCCCCCCAGC CCCCACATTC TGCCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 2341 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 2401 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACGAA TATCTAATGC 2461 TCGTTTGACG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt