Construct: ORF TRCN0000470842
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009054.1_s317c1
- Derived from:
- ccsbBroadEn_11921
- DNA Barcode:
- CGGCAAAATAGCGCGGCTCGTATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD209 (30835)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470842
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 30835 | CD209 | CD209 molecule | NM_001144896.2 | 96% | 95% | (many diffs) |
| 2 | human | 30835 | CD209 | CD209 molecule | NM_001144894.2 | 91.6% | 92.3% | (many diffs) |
| 3 | human | 30835 | CD209 | CD209 molecule | NM_021155.4 | 90.4% | 89.5% | (many diffs) |
| 4 | human | 30835 | CD209 | CD209 molecule | NM_001144897.2 | 88.9% | 88% | (many diffs) |
| 5 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722612.3 | 80.7% | 74.4% | (many diffs) |
| 6 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722614.3 | 79.5% | 77.1% | (many diffs) |
| 7 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722613.3 | 78.1% | 73.6% | (many diffs) |
| 8 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722611.2 | 75.6% | 69.7% | (many diffs) |
| 9 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_014257.5 | 75.4% | 69.5% | (many diffs) |
| 10 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144904.2 | 73% | 68.4% | (many diffs) |
| 11 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_936147.2 | 70.9% | (many diffs) | |
| 12 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144905.2 | 70.8% | 64.7% | (many diffs) |
| 13 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144910.2 | 70.6% | 64.6% | (many diffs) |
| 14 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144907.2 | 70.1% | 64% | (many diffs) |
| 15 | human | 30835 | CD209 | CD209 molecule | NM_001144895.2 | 68% | 67% | (many diffs) |
| 16 | human | 30835 | CD209 | CD209 molecule | NM_001144893.2 | 67.7% | 68.1% | (many diffs) |
| 17 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144909.2 | 65.8% | 59.7% | (many diffs) |
| 18 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144911.2 | 61.8% | 56.8% | (many diffs) |
| 19 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_430125.2 | 61.6% | (many diffs) | |
| 20 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722615.2 | 60% | 53.8% | (many diffs) |
| 21 | human | 30835 | CD209 | CD209 molecule | NM_001144899.2 | 57.6% | 50.2% | (many diffs) |
| 22 | human | 30835 | CD209 | CD209 molecule | XM_005272472.4 | 56.8% | 55.8% | (many diffs) |
| 23 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144906.2 | 54% | 47.7% | (many diffs) |
| 24 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026707.2 | 43.6% | (many diffs) | |
| 25 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144908.2 | 41% | 34.8% | (many diffs) |
| 26 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026709.2 | 40.1% | (many diffs) | |
| 27 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753584.1 | 39.5% | (many diffs) | |
| 28 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026708.2 | 39% | (many diffs) | |
| 29 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753583.1 | 38.2% | (many diffs) | |
| 30 | human | 30835 | CD209 | CD209 molecule | NR_026692.2 | 26% | 1_123del;228_299del;1336_4384del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1209
- ORF length:
- 1140
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcctcagcc tgcccaggct ctgatttcac gtctatccat tcagaggagg 121 aacagctgag aggccttgga ttccgacaga ctcgaggata caagagctta gcagtgtcca 181 aggtccccag ctccataagt caggaacaat ccaggcaaga cgcgatctac cagaacctga 241 cccagcttaa agctgcagtg ggtgagctct cagagaaatc caagctgcag gagatctacc 301 aggagctgac ccagctgaag gctgcagtgg gtgagcttcc agagaaatct aagctgcagg 361 agatctacca ggagctgacc cggctgaagg ctgcagtggg tgagcttcca gagaaatcta 421 agctgcagga gatctaccag gagctgacct ggctgaaggc tgcagtgggt gagcttccag 481 agaaatctaa gatgcaggag atctaccagg agctgactcg gctgaaggct gcagtgggtg 541 agcttccaga gaaatctaag cagcaggaga tctaccagga gctgacccgg ctgaaggctg 601 cagtgggtga gcttccagag aaatctaagc agcaggagat ctaccaggag ctgacccggc 661 tgaaggctgc agtgggtgag cttccagaga aatctaagca gcaggagatc taccaggagc 721 tgacccagct gaaggctgca gtggaacgcc tgtgccaccc ctgtccctgg gaatggacat 781 tcttccaagg aaactgttac ttcatgtcta actcccagcg gaactggcac gactccatca 841 ccgcctgcaa agaagtgggg gcccagctcg tcgtaatcaa aagtgctgag gagcagaact 901 tcctacagct gcagtcttcc agaagtaacc gcttcacctg gatgggactt tcagatctaa 961 atcaggaagg cacgtggcaa tgggtggacg gctcacctct gttgcccagc ttcaagcagt 1021 attggaacag aggagagccc aacaacgttg gggaggaaga ctgcgcGGAA TTTAGTGGCA 1081 ATGGCTGGAA CGACGACAAA TGTAATCTTG CCAAATTCTG GATCTGCAAA AAGTCCGCAG 1141 CCTCCTGCTC CAGGGATGAA GAACAGTTTC TTTCTCCAGC CCCTGCCACC CCAAACCCCC 1201 CTCCTGCGTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1261 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1321 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACGGCAA AATAGCGCGG CTCGTATTAC 1381 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt