Construct: ORF TRCN0000471743
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008426.1_s317c1
- Derived from:
- ccsbBroadEn_12232
- DNA Barcode:
- GTACTTGCGGGATATGTGTTGCAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD10 (55608)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471743
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | NM_001286721.2 | 100% | 100% | |
| 2 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XM_024449381.1 | 76.4% | 69.6% | (many diffs) |
| 3 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XM_024449382.1 | 72.4% | 66% | (many diffs) |
| 4 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XM_024449383.1 | 70.3% | 69% | 458_459insTATTTCACAGA;461_462insGTGTACAT;465_465delGins177 |
| 5 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XM_024449380.1 | 54.4% | 50.4% | 455_456ins94;567_945del |
| 6 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | NR_104586.2 | 47.4% | (many diffs) | |
| 7 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | NM_017664.4 | 41.8% | 38.3% | 455_456ins94;567_1260del |
| 8 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | NR_104587.2 | 25.8% | 1_135del;796_2557del | |
| 9 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957459.1 | 25.4% | 1_137del;798_2591del | |
| 10 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957468.1 | 24.4% | 1_137del;593_701del;907_2700del | |
| 11 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957467.1 | 23.7% | 1_137del;593_783del;989_2782del | |
| 12 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957461.1 | 23.6% | (many diffs) | |
| 13 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957463.1 | 22.4% | (many diffs) | |
| 14 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957462.1 | 19.4% | (many diffs) | |
| 15 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957460.1 | 18.4% | 1_137del;685_1529del;1643_3581del | |
| 16 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957464.1 | 18.1% | (many diffs) | |
| 17 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957458.1 | 17.8% | 1_137del;592_593ins94;704_3084del | |
| 18 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957466.1 | 17.4% | (many diffs) | |
| 19 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957465.1 | 15.6% | (many diffs) | |
| 20 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957469.1 | 10.7% | (many diffs) | |
| 21 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957471.1 | 10.5% | (many diffs) | |
| 22 | human | 55608 | ANKRD10 | ankyrin repeat domain 10 | XR_002957470.1 | 9.7% | (many diffs) | |
| 23 | mouse | 102334 | Ankrd10 | ankyrin repeat domain 10 | XM_006508687.3 | 52.3% | 50.8% | (many diffs) |
| 24 | mouse | 102334 | Ankrd10 | ankyrin repeat domain 10 | NM_001167967.2 | 47.6% | 46% | (many diffs) |
| 25 | mouse | 102334 | Ankrd10 | ankyrin repeat domain 10 | NM_133971.3 | 37% | 35.3% | (many diffs) |
| 26 | mouse | 102334 | Ankrd10 | ankyrin repeat domain 10 | XM_006508685.3 | 36.9% | 35.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 726
- ORF length:
- 660
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc ggcggcggga gcgggcgcgg gcgtagaggc gggcttctcc agcgaggagc 121 tgctctcgct ccgtttcccg ctgcaccgcg cctgccgcga cggggacctg gccacgctct 181 gctcgctgct gcagcagaca ccccacgccc acctggcctc tgaggactcc ttctatggct 241 ggacgcccgt gcactgggcc gcgcatttcG GCAAGTTGGA GTGCTTAGTG CAGTTGGTGA 301 GAGCGGGAGC CACACTCAAC GTCTCCACCA CACGGTACGC GCAGACGCCA GCCCACATTG 361 CAGCCTTTGG GGGACATCCT CAGTGCCTGG TCTGGCTGAT TCAAGCAGGA GCCAACATTA 421 ACAAACCGGA TTGTGAGGGT GAAACTCCCA TTCACAAGGC AGCTCGCTCT GGGAGCCTAG 481 AATGCATCAG TGCCCTTGTG GCGAATGGGG CTCACGTCGA GTTTATTTCA CAGAGCAGTG 541 TACATTCTTG TCTTCCAGGG GAACTTCAAC ATGGAGTTAC TTTTGATCCC TCAGTTTTAA 601 TTCAGTGTCT AAAGCCTGAG AAATGCCAGT GGCCTGACAG CAGCAGACAT TGCACAAACC 661 CAGGGTTTCC AAGAGTGTGC CCAGTTTCTC TTGAACCTCC AGAATTGTCA TCTGAACCAT 721 TTCTATACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 781 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 841 CTTGGCTTTA TATATCTTGT GGAAAGGACG AGTACTTGCG GGATATGTGT TGCAGACGCG 901 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt