Construct: ORF TRCN0000479506
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018398.1_s317c1
- Derived from:
- ccsbBroadEn_11432
- DNA Barcode:
- GTGGTCCAAAGACGCTATTCAGCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARNT2 (9915)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479506
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9915 | ARNT2 | aryl hydrocarbon receptor n... | NM_014862.4 | 96.7% | 95.7% | (many diffs) |
| 2 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | NM_007488.3 | 86% | 92.8% | (many diffs) |
| 3 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | XM_006507244.3 | 85.6% | 93% | (many diffs) |
| 4 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | XM_006507239.3 | 85.5% | 92.3% | (many diffs) |
| 5 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | XM_006507238.3 | 84.7% | 91.7% | (many diffs) |
| 6 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | XM_006507240.2 | 84.6% | 91.3% | (many diffs) |
| 7 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | XM_006507242.2 | 84.6% | 91.3% | (many diffs) |
| 8 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | XM_011241655.2 | 84.6% | 91.3% | (many diffs) |
| 9 | mouse | 11864 | Arnt2 | aryl hydrocarbon receptor n... | XM_006507243.1 | 84.1% | 90.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2214
- ORF length:
- 2148
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagaag 61 ttggcatggc aaccccggcg gcggtcaacc ctccggaaat ggcttcagac atacctggat 121 ctgtgacgtt gcccgttgcc cccatggcgg ccaccggaca ggtgaggatg gcgggggcca 181 tgcctgcccg tggaggaaag cggcgttccg gaatggactt cgatgatgaa gatggtgaag 241 gccccagtaa attttcaaga gagaatcata gtgaaatcga aaggcgcaga cggaacaaga 301 tgactcagta catcacggag ctctccgaca tggtccccac atgcagcgca ctggctcgga 361 agccagacaa gctcaccatc ctccgcatgg ccgtctcgca catgaagtcc atgaggggta 421 cagggaacaa gtccaccgat ggcgcgtaca agccttcctt cctcacagag caggaactga 481 agcatctcat ccttgaagca gctgatggat ttctgtttgt ggtggctgct gagacagggc 541 gagtgattta tgtgtctgac tccgtcaccc ctgttctgaa ccagccccag tcagagtggt 601 ttgggagcac actgtatgaa caggtgcatc ctgatgacgt ggagaagctg agagagcaac 661 tgtgcacctc agaaaactca atgacaggcc ggatcttgga cctgaagact gggacggtca 721 agaaagaagg gcagcagtca tccatgagga tgtgcatggg ctcgcggcgg tctttcatct 781 gcaggatgag gtgtggaaat gctcctttgg accaccttcc tctaaacaga ataaccacca 841 tgaggaaaag gttcaggaat ggccttggcc ctgtgaaaga aggagaagcc caatatgctg 901 tggtccactg tacaggatac atcaaggcct ggccaccagc aggaatgacc atacctgaag 961 aagacgctga tgtgggacaa ggcagtaaat attgcctcgt ggcaattggg agactccagg 1021 tgaccagctc tcctgtatgc atggacatga atgggatgtc ggtgcccaca gagttcttat 1081 cccggcataa ctccgatgga atcatcacat ttgtggatcc aagatgtatc agtgtgattg 1141 gctaccaacc gcaggatctt ctgggaaagg acattttgga attctgccac cctgaggatc 1201 aaagccatct gcgtgagagc ttccagcagg tggttaagct gaaaggccaa gtcctgtcgg 1261 tcatgtatcg atttcgcacc aagaaccggg agtggatgtt gatccgcacc agcagcttca 1321 cattccagaa tccctattct gatgagattg agtacatcat ctgcaccaac accaacgtca 1381 agcaacttca gcaacagcag gcagaattgg aagtgcacca gagagatgga ttgtcatcgt 1441 atgacttatc ccaggtcccc gtccccaacc taccagccgg tgttcatgag gccgggaagt 1501 ccgtggaaaa ggcggatgca atcttctccc aggaaagaga tcctcggttt gctgaaatgt 1561 ttgcaggaat tagtgcatcg gagaagaaga tgatgagctc agcctctgca gcaggaaccc 1621 agcagatcta ctcccaagga agcccatttc cctctggaca ctccgggaag gccttcagct 1681 cttcagtggt tcatgtgcct ggagtgaatg atattcagtc ctcttcttcc acgggccaga 1741 acatgtccca aatctcccgg cagctaaacc agagtcaggt ggcatggaca gggagtcgtc 1801 cgccctttcc gggacagcaa atcccatctc agtccagcaa gactcagtca tctccctttg 1861 ggattggaac gagccacacc tacccggcag acccctcttc ctacagcccc ctctccagcc 1921 cagctaccTC CTCGCCAAGT GGGAATGCCT ACTCCAGTCT TGCCAACAGG ACTCCAGGGT 1981 TCGCTGAAAG TGGACAAAGT AGCGGGCAGT TCCAAGGGCG GCCCTCGGAA GTCTGGTCGC 2041 AGTGGCAAAG CCAGCACCAT GGCCAGCAGA GCGGTGAGCA GCACTCCCAC CAGCAGCCCG 2101 GTCAGACTGA AGTGTTCCAG GACATGCTGC CCATGCCAGG AGATCCAGGG AATGAATGGT 2161 GGTCTCCCCA CTCCCGGCAG CACTTTAGGC AGCCCATAAG CTATGCGAGA ATGTGCCCAA 2221 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 2281 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 2341 TATCTTGTGG AAAGGACGAG TGGTCCAAAG ACGCTATTCA GCCACGCGTT AAGTCgacaa 2401 tcaacctctg gattacaaaa tttgtgaaag att