Construct: ORF TRCN0000479889

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007587.1_s317c1
Derived from:
ccsbBroadEn_15515
DNA Barcode:
AACGTAAGATGCATCTGACTCGGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OGDH (4967)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479889
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4967 OGDH oxoglutarate dehydrogenase NM_001003941.3 100% 100%
2 human 4967 OGDH oxoglutarate dehydrogenase NM_002541.4 41% 40% (many diffs)
3 human 4967 OGDH oxoglutarate dehydrogenase XM_005249759.5 40.4% 39.4% (many diffs)
4 human 4967 OGDH oxoglutarate dehydrogenase XM_011515408.2 40.4% 39.4% (many diffs)
5 human 4967 OGDH oxoglutarate dehydrogenase NM_001363523.2 39.1% 37.7% (many diffs)
6 human 4967 OGDH oxoglutarate dehydrogenase NM_001165036.2 39.1% 38.1% (many diffs)
7 human 4967 OGDH oxoglutarate dehydrogenase XM_024446783.1 21% 14.9% (many diffs)
8 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... NM_001252287.1 37.7% 39% (many diffs)
9 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... NM_010956.4 37.7% 39% (many diffs)
10 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... XM_006514585.2 37.7% 39% (many diffs)
11 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... NM_001252282.1 37.2% 38.4% (many diffs)
12 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... NM_001252288.1 36.2% 37% (many diffs)
13 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... XM_006514586.3 36.2% 37% (many diffs)
14 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... NM_001252283.1 36% 36.7% (many diffs)
15 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... XM_006514582.2 36% 36.7% (many diffs)
16 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... XM_006514583.3 36% 36.7% (many diffs)
17 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... XM_006514584.3 36% 36.7% (many diffs)
18 mouse 18293 Ogdh oxoglutarate (alpha-ketoglu... XM_017314337.1 36% 36.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1347
ORF length:
1281
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt tcatttaagg acttgtgctg ctaagttgag gccattgacg gcttcccaga
121ctgttaagac attttcacaa aacagaccag cagcagctag gacatttcaa cagattcggt
181gctattctgc acctgttgct gctgagccct ttctcagtgg gactagttcg aactatgtgg
241aggagatgta ctgtgcttgg ctggaaaacc ccaaaagtgt acataagtca tgggacattt
301tttttcgcaa cacgaatgcc ggagccccac cgggcactgc ctaccagagt ccccttcccc
361tgagccgagg ctccctggct gctgtggccc atgcacagtc cctggtagaa gcacagccca
421acgtggacaa gctcgtggag gaccacctgg cagtgcagtc gctcatcagg gcatatcaga
481tacgagggca ccatgtagca cagctggacc ccctggggat tttggatgct gatctggact
541cctccgtgcc cgctgacatt atctcatcca cagacaaact tgggttctat ggcctggatg
601agtctgacct cgacaaggtc ttccacttgc ccaccaccac tttcatcggg ggacaggaat
661cagcacttcc tctgcgggag atcatccgtc ggctggagat ggcctactgc cagcatattg
721gggtggagtt catgttcatc aatgacctgg agcagtgcca gtggatccgg cagaagtttg
781agacccctgg gatcatgcag ttcacaaatg aggagaaacg gaccctgctg gccaggcttg
841tgcggtccac caggtttgag gagttcctac agcggaagtg gtcctctgag aagcgctttg
901gtctagaagg ctgcgaggta ctgatccctg ccctcaagac catcattgac aagtctagtg
961agaatggcgt ggacTACGTG ATCATGGGCA TGCCACACAG AGGGCGGCTG AACGTGCTTG
1021CAAATGTCAT CAGGAAGGAG CTGGAACAGA TCTTCTGTCA ATTCGATTCA AAGCTGGAGG
1081CAGCTGATGA GGGCTCCGGA GATGTGAAGT ACCACCTGGG CATGTATCAC CGCAGGATCA
1141ATCGTGTCAC CGACAGGAAC ATTACCTTGT CCTTGGTGGC CAACCCTTCC CACCTTGAGG
1201CCGCTGACCC CGTGGTGATG GGCAAGACCA AAGCCGAACA GTTTTACTGT GGCGACACTG
1261AAGGGAAAAA GGTAAGGCCC AGAGAGAGGC GTGCAAGGCA GATCGTCAAG GCCCCATGTT
1321CCAGCATGGA GTTCCGCTCA CCAACATACC CAACTTTCTT GTACAAAGTG GTTGATATCG
1381GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT
1441AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAAACGTAAG
1501ATGCATCTGA CTCGGCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga
1561aagatt

Download FASTA (ORF) (Full)

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