Construct: ORF TRCN0000489540
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021999.1_s317c1
- DNA Barcode:
- TAGGTATCGCTAGCTGATTAAACG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- TRAF3IP1 (26146)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489540
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | NM_001139490.1 | 99.8% | 99.8% | 69C>A;683A>G;906T>C |
| 2 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_006712414.2 | 99.6% | 99.6% | (many diffs) |
| 3 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510948.2 | 94.6% | 94.6% | (many diffs) |
| 4 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | NM_015650.4 | 90.3% | 90.3% | (many diffs) |
| 5 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510945.2 | 87.6% | 87.6% | (many diffs) |
| 6 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510944.2 | 86% | 86% | (many diffs) |
| 7 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_017003789.1 | 85.9% | 85.9% | (many diffs) |
| 8 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510946.2 | 82.7% | 82.7% | (many diffs) |
| 9 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510947.2 | 80% | 80% | (many diffs) |
| 10 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XR_922902.2 | 63.6% | (many diffs) | |
| 11 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XM_011510950.2 | 47.8% | 43.1% | (many diffs) |
| 12 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XR_001738696.1 | 42.7% | (many diffs) | |
| 13 | human | 26146 | TRAF3IP1 | TRAF3 interacting protein 1 | XR_001738697.1 | 42.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1944
- ORF length:
- 1875
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat gaacgcggcg gtggtgaggc ggacgcagga ggcgctgggg aaagtgattc 121 ggaggccgcc gctgacagag aagctgctga gcaagccccc gttccgctac ctgcacgaca 181 tcatcacgga ggtgattaga atgactggtt tcatgaaggg cctctacaca gacgccgaga 241 tgaagtctga taatgtgaag gataaagatg caaaaattag cttcctacaa aaggccatag 301 acgtggttgt aatggtgtcg ggagagccac tgttggccaa accagcccga atcgtggcgg 361 ggcatgagcc tgaaagaaca aacgagctgc tccagataat tggaaaatgc tgtctcaaca 421 agctctctag tgacgatgcg gtgcggaggg ttttagctgg agagaaggga gaagtgaaag 481 gccgggcctc actgacctca agatctcagg aattggataa taagaatgtg cgagaagaag 541 agtccagagt tcacaaaaat acagaggata gaggagacgc tgaaataaaa gagagaagta 601 caagcagaga tcgaaaacag aaggaagaat tgaaagaaga ccgcaagcca agagaaaagg 661 acaaggacaa ggagaaggcc aaggagaatg gcggaaacag acacagagaa ggggagagag 721 agagagccaa agcccgggcc aggccagaca gcgagcgaca gaaagacaga ggcaacaggg 781 agcgggacag agactccgag cgcaagaagg agacagagag aaagagtgag ggggggaaag 841 agaaggagag actgagagac agggaccgag agcgcgaccg ggacaaaggg aaggacaggg 901 acagacggag agtgaaaaac ggggagcact cctgggacct ggacagggag aagaacagag 961 agcatgacaa acccgagaaa aagtcagcaa gctcagggga gatgtctaaa aagttatcag 1021 atggaacttt taaagactcc aaggctgaaa cagagactga gatttccact agagcttcca 1081 agtcattgac aacaaaaaca tcaaaacggc gatccaaaaa ttcagtggaa ggtgactcca 1141 ccagtgatgc agaaggagat gctggacctg ctggccaaga taagtctgag gtgccagaga 1201 ctccagaaat tcctaatgag ctttcatcca acatcagaag aattcctcgg cctgggagtg 1261 caagaccagc ccctccccgg gtcaaacggc aagacagcat ggaggcgcta caaatggata 1321 ggtcagggag tggtaaaacc gtttcaaatg tgattacaga gtcacacaat tctgacaatg 1381 aagaggatga tcaatttgtg gtggaagctg cccctcagct ctctgaaatg tcagaaattg 1441 aaatggtaac agcagtggaa ctagaagaag aggagaagca tggtggactt gtgaaaaaaa 1501 ttttggagac gaagaaagat tatgagaaat tgcagcagtc acccaaacct ggggagaagg 1561 agcgatctct ctttGAGTCG GCATGGAAGA AGGAGAAGGA CATCGTTTCC AAGGAGATAG 1621 AGAAGCTCCG CACGTCCATC CAGACCCTGT GCAAGAGCGC ACTTCCCCTG GGGAAGATCA 1681 TGGACTACAT CCAGGAAGAC GTGGATGCCA TGCAGAATGA GCTGCAGATG TGGCACAGCG 1741 AGAACAGGCA GCACGCCGAG GCCCTGCAGC AGGAGCAGAG GATCACAGAC TGTGCCGTGG 1801 AGCCCTTAAA GGCTGAGCTC GCGGAGCTGG AGCAGCTGAT CAAAGACCAG CAAGACAAGA 1861 TCTGTGCTGT GAAGGCCAAC ATCCTCAAGA ATGAAGAAAA AATCCAGAAA ATGGTATATA 1921 GTATCAATTT GACTTCGAGA AGGTAGGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG 1981 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 2041 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATAGGTATC 2101 GCTAGCTGAT TAAACGACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 2161 aagatt