Construct: ORF ccsbBroad304_07015

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018427.1_s304c1, BRDN0000406237
Derived from:
ccsbBroadEn_07015
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SULT1A1 (6817)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07015
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6817 SULT1A1 sulfotransferase family 1A ... NM_001055.3 99.8% 99.6% 638G>A
2 human 6817 SULT1A1 sulfotransferase family 1A ... NM_177529.2 99.8% 99.6% 638G>A
3 human 6817 SULT1A1 sulfotransferase family 1A ... NM_177530.2 99.8% 99.6% 638G>A
4 human 6817 SULT1A1 sulfotransferase family 1A ... NM_177534.2 99.8% 99.6% 638G>A
5 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023611.2 99.8% 99.6% 638G>A
6 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023612.2 99.8% 99.6% 638G>A
7 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023613.2 99.8% 99.6% 638G>A
8 human 6817 SULT1A1 sulfotransferase family 1A ... XM_024450409.1 99.8% 99.6% 638G>A
9 human 6817 SULT1A1 sulfotransferase family 1A ... XM_024450410.1 99.8% 99.6% 638G>A
10 human 6817 SULT1A1 sulfotransferase family 1A ... XM_024450411.1 99.8% 99.6% 638G>A
11 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023604.1 97.8% 97.6% 593_610del;656G>A
12 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023605.1 97.8% 97.6% 593_610del;656G>A
13 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023608.1 97.8% 97.6% 593_610del;656G>A
14 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023609.1 97.8% 97.6% 593_610del;656G>A
15 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023610.1 97.8% 97.6% 593_610del;656G>A
16 human 6799 SULT1A2 sulfotransferase family 1A ... NM_177528.2 96.8% 95.5% (many diffs)
17 human 6799 SULT1A2 sulfotransferase family 1A ... NM_001054.4 96.7% 95.2% (many diffs)
18 human 445329 SULT1A4 sulfotransferase family 1A ... NM_001017390.2 94.3% 92.5% (many diffs)
19 human 6818 SULT1A3 sulfotransferase family 1A ... NM_177552.3 94.3% 92.5% (many diffs)
20 human 6817 SULT1A1 sulfotransferase family 1A ... XM_017023607.2 76.3% 76.1% 1_273del;911G>A
21 human 6817 SULT1A1 sulfotransferase family 1A ... XM_024450408.1 76.1% 75.9% 1_276del;914G>A
22 human 6799 SULT1A2 sulfotransferase family 1A ... NM_001363863.1 69.7% 64.7% (many diffs)
23 human 6817 SULT1A1 sulfotransferase family 1A ... NM_177536.3 65.9% 59% (many diffs)
24 human 6817 SULT1A1 sulfotransferase family 1A ... XR_001751973.1 65% (many diffs)
25 human 100526831 SLX1B-SULT1A4 SLX1B-SULT1A4 readthrough (... NR_037609.1 37.7% (many diffs)
26 human 100526830 SLX1A-SULT1A3 SLX1A-SULT1A3 readthrough (... NR_037608.1 37.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
951
ORF length:
885
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gctgatccag gacacctccc gcccgccact ggagtacgtg aagggggtcc
121cgctcatcaa gtactttgca gaggcactgg ggcccctgca gagcttccag gcccggcctg
181atgacctgct catcagcacc taccccaagt ccggcactac ctgggtaagc cagattctgg
241acatgatcta ccagggtggt gacctggaga agtgtcaccg agctcccatc ttcatgcggg
301tgcccttcct tgagttcaaa gccccaggga ttccctcagg gatggagact ctgaaagaca
361caccggcccc acgactcctg aagacacacc tgcccctggc tctgctcccc cagactctgt
421tggatcagaa ggtcaaggtg gtctatgttg cccgcaacgc aaaggatgtg gcagtttcct
481actaccactt ctaccacatg gccaaggtgc accctgagcc tgggacctgg gacagcttcc
541tggagaagtt catggtcgga gaagtgtcct acggatcctg gtaccagcac gtgcaggagt
601ggtgggagct gagccgcacc caccctgttc tctacctctt ctatgaagac atgaaggaga
661acccgaaaag ggagattcaa aagatcctgg agtttgtggg gcactccctg ccagaggaga
721ccgtggactt cgtggttcag cacacgtcgt tcaaggagat gaagaagaac cctatgacca
781actacaccac cgtcccccag gagttcatgg accacagcat ctcccccttc atgaggaaag
841gcatggctgg ggactggaag accaccttca ccgtggcgca gaatgagcgc ttcgatgcgg
901actatgcgga gaagatggca ggctgcagcc tcagcttccg ctctgagctg tgcccaactt
961tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1021agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)