Construct: ORF ccsbBroad304_07649

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006249.1_s304c1, BRDN0000404095
Derived from:
ccsbBroadEn_07649
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDLIM5 (10611)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07649
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10611 PDLIM5 PDZ and LIM domain 5 NM_001011516.2 99.8% 100% 468G>A
2 human 10611 PDLIM5 PDZ and LIM domain 5 NM_001011515.2 89.8% 87.6% (many diffs)
3 human 10611 PDLIM5 PDZ and LIM domain 5 NM_001256427.2 41.3% 36.3% (many diffs)
4 human 10611 PDLIM5 PDZ and LIM domain 5 NM_001011513.4 40.3% 35.2% (many diffs)
5 human 10611 PDLIM5 PDZ and LIM domain 5 NM_006457.5 33.7% 29.5% (many diffs)
6 human 10611 PDLIM5 PDZ and LIM domain 5 NM_001256426.1 31.7% 29.2% (many diffs)
7 mouse 56376 Pdlim5 PDZ and LIM domain 5 NM_001190853.1 90.1% 94.3% (many diffs)
8 mouse 56376 Pdlim5 PDZ and LIM domain 5 NM_001190857.1 81.1% 83.3% (many diffs)
9 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_006501751.2 81.1% 83.3% (many diffs)
10 mouse 56376 Pdlim5 PDZ and LIM domain 5 NM_022554.3 80.1% 83.2% (many diffs)
11 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_006501750.2 80.1% 83.2% (many diffs)
12 mouse 56376 Pdlim5 PDZ and LIM domain 5 NM_019809.3 57% 57.2% (many diffs)
13 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_006501746.1 31% 27.4% (many diffs)
14 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_017319659.1 30.2% 29.1% (many diffs)
15 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_006501743.1 27.9% 27% (many diffs)
16 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_006501742.1 26.4% 25.1% (many diffs)
17 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_006501741.1 25.9% 25.3% (many diffs)
18 mouse 56376 Pdlim5 PDZ and LIM domain 5 XM_006501738.1 24.8% 23.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
708
ORF length:
642
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag caactacagt gtgtcactgg ttggcccagc tccttggggt ttccggctgc
121agggcggtaa ggatttcaac atgcctctga caatctctag tctaaaagat ggcggcaagg
181cagcccaggc aaatgtaaga ataggcgatg tggttctcag cattgatgga ataaatgcac
241aaggaatgac tcatcttgaa gcccagaata agattaaggg ttgtacaggc tctttgaata
301tgactctgca aagagcatct gctgcaccca agcctgagcc ggttcctgtt caaaagaaaa
361cacaagtgac aaataaccct ggcactgtga aaatcccacc taaacgccca ccaagaaaac
421acattgtgga gcgctataca gagttttatc atgtacccac tcacagtgat gccagcaaga
481agagactgat tgaggatact gaagactggc gtccaaggac tggaacaact caatctcgct
541ctttccgaat ccttgcccag atcactggga ctgaacattt gaaagaatct gaagccgata
601atacaaagaa ggcaaaggaa aagatacccc ttcacgtctt tagtcccaaa tacacaaaat
661tacgtgactg gcaccatgaa gtttcagcac gtgctcttaa cgtacagtgc ccaactttct
721tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
781aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)