Construct: ORF ccsbBroad304_11063

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018096.1_s304c1, BRDN0000403530
Derived from:
ccsbBroadEn_11063
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG4 (5672)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11063
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 97.4% 95.4% (many diffs)
2 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 96.6% 94.7% (many diffs)
3 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 96.2% 92.6% (many diffs)
4 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 95.4% 93.4% (many diffs)
5 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 95.1% 92.7% (many diffs)
6 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 94.7% 91.6% (many diffs)
7 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 94% 90.6% (many diffs)
8 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 93.9% 90.1% (many diffs)
9 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 92.9% 89.4% (many diffs)
10 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 92.7% 88.1% (many diffs)
11 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 91% 85.5% (many diffs)
12 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 90.2% 82.5% (many diffs)
13 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 89% 83.9% (many diffs)
14 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 88.4% 81.1% (many diffs)
15 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 77.8% 71.5% (many diffs)
16 human 5669 PSG1 pregnancy specific beta-1-g... NM_001330524.2 75.2% 73.2% (many diffs)
17 human 5672 PSG4 pregnancy specific beta-1-g... NM_001276495.1 75% 73% (many diffs)
18 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 74.2% 72% (many diffs)
19 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 74.1% 70.4% (many diffs)
20 human 5669 PSG1 pregnancy specific beta-1-g... XM_005259065.4 73.6% 71.5% (many diffs)
21 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 73.5% 70.6% (many diffs)
22 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027001.2 73.2% 70.8% (many diffs)
23 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 72.3% 68.3% (many diffs)
24 human 5673 PSG5 pregnancy specific beta-1-g... NM_001130014.2 71.4% 66.5% (many diffs)
25 human 5673 PSG5 pregnancy specific beta-1-g... NM_002781.4 71.4% 66.5% (many diffs)
26 human 5673 PSG5 pregnancy specific beta-1-g... XM_017027003.1 71.4% 66.5% (many diffs)
27 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 71.3% 66.3% (many diffs)
28 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 70.4% 64.5% (many diffs)
29 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301707.2 70% 63.4% (many diffs)
30 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 69.8% 62.4% (many diffs)
31 human 5672 PSG4 pregnancy specific beta-1-g... NM_001316339.2 69.3% 67% (many diffs)
32 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 68.2% 64.2% (many diffs)
33 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130168.2 67.3% 65.3% (many diffs)
34 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526987.3 66.2% 61.6% (many diffs)
35 human 5676 PSG7 pregnancy specific beta-1-g... NM_001206650.2 66.1% 65.1% (many diffs)
36 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027005.2 60.4% 54.9% (many diffs)
37 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 60.2% 54.1% (many diffs)
38 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526988.2 58.7% 57.2% (many diffs)
39 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 52.7% 49.4% (many diffs)
40 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301709.2 49.5% 43.8% (many diffs)
41 human 653492 PSG10P pregnancy specific beta-1-g... NR_026824.1 44.8% (many diffs)
42 human 5680 PSG11 pregnancy specific beta-1-g... NM_001113410.2 43.5% 38.7% (many diffs)
43 human 5680 PSG11 pregnancy specific beta-1-g... NM_203287.2 43.5% 38.7% (many diffs)
44 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027006.2 42.7% 37.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1323
ORF length:
1257
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttgncatggg aaccctctca gcccctccct gcacacagcg catcaaatgg aaggggctcc
121tgctcacagc atcactttta aacttctgga acctgcccac cactgcccaa gtcacgattg
181aagccgagcc aaccaaagtt tccgagggga aggatgttct tctacttgtc cacaatttgc
241cccagaatct taccggctac atctggtaca aagggcaaat gagggacctc taccattaca
301ttacatcata tgtagtagac ggtgaaataa ttatatatgg gcctgcatat ggtggacgag
361aaacagcata ttccaatgca tccctgctga tccagaatgt cacccgggag gacgcaggat
421cctacacctt acacatcata aagggagatg atgggactag aggagtaact ggacgtttca
481ccttcacctt acacctggag actcctaagc cctccatctc cagcagcaac ttaaatccca
541gggagaccat ggaggctgtg agcttaacct gtgaccctga gactccagac gcaagctacc
601tgtggtggat gaatggtcag agcctcccta tgactcacag cttgaagctg tccgaaacca
661acaggaccct ctttctattg ggtgtcacaa agtatactgc aggaccctat gaatgtgaaa
721tacggaaccc agtgagtgcc agccgcagtg acccagtcac cctgaatctc ctcccaaagc
781tgtccaagcc ctacatcaca atcaacaact taaaccccag agagaataag gatgtcttaa
841ccttcacctg tgaacctaag agtgagaact acacctacat ttggtggcta aatggtcaga
901gcctccctgt cagtcccagg gtaaagcgac ccattgaaaa caggatcctc attctaccca
961atgtcacgag aaatgaaaca ggaccttatc aatgtgaaat acgggaccga tatggtggca
1021tccgcagtga cccagtcacc ctgaatgtcc tctatggtcc agacctcccc agcatttacc
1081cttcattcac ctattaccgt tcaggagaaa acctctactt gtcctgcttc gccgagtcta
1141acccacgggc acaatattct tggacaatta atgggaagtt tcagctatca ggacaaaagc
1201tctctatccc ccaaataact acaaagcata gtgggctcta tgcttgctct gttcgtaact
1261cagccactgg caaggaaagc tccaaatcca tcacagtcaa agtctctgac tggatattac
1321cctgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1381tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1441tctggatta

Download FASTA (ORF) (Full)