Construct: ORF ccsbBroad304_11549

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018394.1_s304c1, BRDN0000407310
Derived from:
ccsbBroadEn_11549
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF273 (10793)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11549
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 440519 ZNF724 zinc finger protein 724 XM_024451521.1 52.2% 49.3% (many diffs)
2 human 51427 ZNF107 zinc finger protein 107 XM_024446791.1 49.7% 45.6% (many diffs)
3 human 730087 ZNF726 zinc finger protein 726 NM_001348688.2 49% 43.8% (many diffs)
4 human 730087 ZNF726 zinc finger protein 726 NM_001348689.2 48.9% 41.9% (many diffs)
5 human 7639 ZNF85 zinc finger protein 85 NM_001256172.2 48.8% 42.5% (many diffs)
6 human 9534 ZNF254 zinc finger protein 254 NM_001278665.2 46.3% 42.3% (many diffs)
7 human 7757 ZNF208 zinc finger protein 208 NM_001329974.1 38.5% 28.5% (many diffs)
8 human 284443 ZNF493 zinc finger protein 493 NM_145326.3 38% 34.9% (many diffs)
9 human 148203 ZNF738 zinc finger protein 738 NM_001355241.2 35.2% 33% (many diffs)
10 human 7697 ZNF138 zinc finger protein 138 NM_001271637.2 34.1% 16.2% (many diffs)
11 human 340252 ZNF680 zinc finger protein 680 XM_017012129.1 34.1% 29.2% (many diffs)
12 human 340252 ZNF680 zinc finger protein 680 NM_001130022.1 33.9% 30.8% (many diffs)
13 human 7757 ZNF208 zinc finger protein 208 NM_001329971.1 30.6% 21.6% (many diffs)
14 human 7757 ZNF208 zinc finger protein 208 NM_001329973.1 30.4% 21.5% (many diffs)
15 human 148203 ZNF738 zinc finger protein 738 NM_001355239.2 29.1% 27.5% (many diffs)
16 human 7757 ZNF208 zinc finger protein 208 NM_001329972.1 25% 19.6% (many diffs)
17 human 7757 ZNF208 zinc finger protein 208 NR_138252.1 14.4% (many diffs)
18 human 102724427 LOC102724427 uncharacterized LOC102724427 XR_936398.2 10.4% (many diffs)
19 human 10793 ZNF273 zinc finger protein 273 XM_024446635.1 9.4% 8.6% (many diffs)
20 human 10793 ZNF273 zinc finger protein 273 XM_024446636.1 9.4% 8.6% (many diffs)
21 human 10793 ZNF273 zinc finger protein 273 XM_024446637.1 9.4% 8.6% (many diffs)
22 human 10793 ZNF273 zinc finger protein 273 XM_024446638.1 9.4% 8.6% (many diffs)
23 human 10793 ZNF273 zinc finger protein 273 XM_024446639.1 9.4% 8.6% (many diffs)
24 human 10793 ZNF273 zinc finger protein 273 XM_024446640.1 9.4% 8.6% (many diffs)
25 human 10793 ZNF273 zinc finger protein 273 XM_024446641.1 9.4% 8.6% (many diffs)
26 human 340252 ZNF680 zinc finger protein 680 XM_006715959.2 8.7% 7.5% (many diffs)
27 human 113835 ZNF257 zinc finger protein 257 NM_001316996.2 8.7% 8% (many diffs)
28 human 7639 ZNF85 zinc finger protein 85 NR_045830.2 8.4% (many diffs)
29 human 10793 ZNF273 zinc finger protein 273 NM_021148.2 8.3% 7.6% (many diffs)
30 human 113835 ZNF257 zinc finger protein 257 NM_033468.4 8.2% 7.6% (many diffs)
31 human 9534 ZNF254 zinc finger protein 254 NM_001278661.1 7.1% 6.3% (many diffs)
32 human 7639 ZNF85 zinc finger protein 85 NM_001256171.1 6.9% 5.9% (many diffs)
33 human 7594 ZNF43 zinc finger protein 43 NM_001256653.1 5.3% 4.6% (many diffs)
34 human 51427 ZNF107 zinc finger protein 107 NM_001282359.1 5% 4.3% (many diffs)
35 human 7757 ZNF208 zinc finger protein 208 NM_007153.3 3.3% 2.4% (many diffs)
36 human 10793 ZNF273 zinc finger protein 273 NR_003099.1 3.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
213
ORF length:
147
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcATGTT AGATAACTAC AGAAACCTGG TCTTCCTGGG TATTGCTGTC TCTAAGCCAG
121ACCTGATCAC TTGTCTGGAG CAAGGAAAAG AGCCCTGCAA TATGAAGAGA CATGCGATGG
181TAGCCAAACC CCCAGGTTGG AGTGCAGTGG CGTGCCCAAC TTTCTTGTAC aaagtggttg
241gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
301accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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