Construct: ORF ccsbBroad304_14721
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018997.1_s304c1, BRDN0000459799
- Derived from:
- ccsbBroadEn_14721
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NTRK2 (4915)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14721
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001018064.3 | 100% | 100% | |
| 2 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369532.1 | 100% | 100% | |
| 3 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369533.1 | 100% | 100% | |
| 4 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_011518718.3 | 100% | 100% | |
| 5 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014752.1 | 100% | 100% | |
| 6 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014753.2 | 100% | 100% | |
| 7 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369534.1 | 98.5% | 98.5% | 1158_1159ins36 |
| 8 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_006180.4 | 98% | 98% | 1396_1443del |
| 9 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252001.3 | 98% | 98% | 1396_1443del |
| 10 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252003.3 | 98% | 98% | 1396_1443del |
| 11 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252004.2 | 98% | 98% | 1396_1443del |
| 12 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014751.2 | 98% | 98% | 1396_1443del |
| 13 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369535.1 | 81% | 81% | 0_1ins468 |
| 14 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369536.1 | 79.4% | 79.4% | 0_1ins468;928_975del |
| 15 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001018066.3 | 64.5% | 64.2% | (many diffs) |
| 16 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369538.1 | 64.5% | 64.2% | (many diffs) |
| 17 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_011518720.3 | 64.5% | 64.2% | (many diffs) |
| 18 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001018065.2 | 63.2% | 63% | (many diffs) |
| 19 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369537.1 | 63.2% | 63% | (many diffs) |
| 20 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252006.4 | 63.2% | 63% | (many diffs) |
| 21 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014755.1 | 63.2% | 63% | (many diffs) |
| 22 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001007097.3 | 57.2% | 56.3% | (many diffs) |
| 23 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369539.1 | 57.2% | 56.3% | (many diffs) |
| 24 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369540.1 | 57.2% | 56.3% | (many diffs) |
| 25 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369541.1 | 57.2% | 56.3% | (many diffs) |
| 26 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369542.1 | 57.2% | 56.3% | (many diffs) |
| 27 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369543.1 | 57.2% | 56.3% | (many diffs) |
| 28 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369544.1 | 57.2% | 56.3% | (many diffs) |
| 29 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369545.1 | 57.2% | 56.3% | (many diffs) |
| 30 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369548.1 | 57.2% | 56.3% | (many diffs) |
| 31 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369549.1 | 57.2% | 56.3% | (many diffs) |
| 32 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014760.2 | 57.2% | 56.3% | (many diffs) |
| 33 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369547.1 | 56.9% | 56.5% | (many diffs) |
| 34 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001291937.1 | 55.7% | 54.6% | (many diffs) |
| 35 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369546.1 | 55.7% | 54.6% | (many diffs) |
| 36 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369550.1 | 38.3% | 37.5% | (many diffs) |
| 37 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369551.1 | 38.3% | 37.5% | (many diffs) |
| 38 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369552.1 | 38.3% | 37.5% | (many diffs) |
| 39 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | NM_001025074.2 | 87.5% | 93.9% | (many diffs) |
| 40 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | NM_001282961.1 | 87.5% | 93.9% | (many diffs) |
| 41 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517149.3 | 87.5% | 93.9% | (many diffs) |
| 42 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_017315419.1 | 87.5% | 93.9% | (many diffs) |
| 43 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517150.3 | 56.3% | 58.3% | (many diffs) |
| 44 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517151.3 | 51.3% | 51% | (many diffs) |
| 45 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | NM_008745.3 | 49.7% | 50.5% | (many diffs) |
| 46 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517152.3 | 49.7% | 50.5% | (many diffs) |
| 47 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_017315420.1 | 49.7% | 50.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2535
- ORF length:
- 2466
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcgtcctgg ataaggtggc atggacccgc catggcgcgg ctctggggct 121 tctgctggct ggttgtgggc ttctggaggg ccgctttcgc ctgtcccacg tcctgcaaat 181 gcagtgcctc tcggatctgg tgcagcgacc cttctcctgg catcgtggca tttccgagat 241 tggagcctaa cagtgtagat cctgagaaca tcaccgaaat tttcatcgca aaccagaaaa 301 ggttagaaat catcaacgaa gatgatgttg aagcttatgt gggactgaga aatctgacaa 361 ttgtggattc tggattaaaa tttgtggctc ataaagcatt tctgaaaaac agcaacctgc 421 agcacatcaa ttttacccga aacaaactga cgagtttgtc taggaaacat ttccgtcacc 481 ttgacttgtc tgaactgatc ctggtgggca atccatttac atgctcctgt gacattatgt 541 ggatcaagac tctccaagag gctaaatcca gtccagacac tcaggatttg tactgcctga 601 atgaaagcag caagaatatt cccctggcaa acctgcagat acccaattgt ggtttgccat 661 ctgcaaatct ggccgcacct aacctcactg tggaggaagg aaagtctatc acattatcct 721 gtagtgtggc aggtgatccg gttcctaata tgtattggga tgttggtaac ctggtttcca 781 aacatatgaa tgaaacaagc cacacacagg gctccttaag gataactaac atttcatccg 841 atgacagtgg gaagcagatc tcttgtgtgg cggaaaatct tgtaggagaa gatcaagatt 901 ctgtcaacct cactgtgcat tttgcaccaa ctatcacatt tctcgaatct ccaacctcag 961 accaccactg gtgcattcca ttcactgtga aaggcaaccc caaaccagcg cttcagtggt 1021 tctataacgg ggcaatattg aatgagtcca aatacatctg tactaaaata catgttacca 1081 atcacacgga gtaccacggc tgcctccagc tggataatcc cactcacatg aacaatgggg 1141 actacactct aatagccaag aatgagtatg ggaaggatga gaaacagatt tctgctcact 1201 tcatgggctg gcctggaatt gacgatggtg caaacccaaa ttatcctgat gtaatttatg 1261 aagattatgg aactgcagcg aatgacatcg gggacaccac gaacagaagt aatgaaatcc 1321 cttccacaga cgtcactgat aaaaccggtc gggaacatct ctcggtctat gctgtggtgg 1381 tgattgcgtc tgtggtggga ttttgccttt tggtaatgct gtttctgctt aagttggcaa 1441 gacactccaa gtttggcatg aaaggcccag cctccgttat cagcaatgat gatgactctg 1501 ccagcccact ccatcacatc tccaatggga gtaacactcc atcttcttcg gaaggtggcc 1561 cagatgctgt cattattgga atgaccaaga tccctgtcat tgaaaatccc cagtactttg 1621 gcatcaccaa cagtcagctc aagccagaca catttgttca gcacatcaag cgacataaca 1681 ttgttctgaa aagggagcta ggcgaaggag cctttggaaa agtgttccta gctgaatgct 1741 ataacctctg tcctgagcag gacaagatct tggtggcagt gaagaccctg aaggatgcca 1801 gtgacaatgc acgcaaggac ttccaccgtg aggccgagct cctgaccaac ctccagcatg 1861 agcacatcgt caagttctat ggcgtctgcg tggagggcga ccccctcatc atggtctttg 1921 agtacatgaa gcatggggac ctcaacaagt tcctcagggc acacggccct gatgccgtgc 1981 tgatggctga gggcaacccg cccacggaac tgacgcagtc gcagatgctg catatagccc 2041 agcagatcgc cgcgggcatg gtctacctgg cgtcccagca cttcgtgcac cgcgatttgg 2101 ccaccaggaa ctgcctggtc ggggagaact tgctggtgaa aatcggggac tttgggatgt 2161 cccgggacgt gtacagcact gactactaca gggtcggtgg ccacacaatg ctgcccattc 2221 gctggatgcc tccagagagc atcatgtaca ggaaattcac gacggaaagc gacgtctgga 2281 gcctgggggt cgtgttgtgg gagattttca cctatggcaa acagccctgg taccagctgt 2341 caaacaatga ggtgatagag tgtatcactc agggccgagt cctgcagcga ccccgcacgt 2401 gcccccagga ggtgtatgag ctgatgctgg ggtgctggca gcgagagccc cacatgagga 2461 agaacatcaa gggcatccat accctccttc agaacttggc caaggcatct ccggtctacc 2521 tggacattct aggcttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc 2581 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 2641 cgacaatcaa cctctggatt a