Construct: ORF ccsbBroadEn_04766

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009282.1_s300c1, BRDN0000386800
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FRMD6 (122786)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 122786 FRMD6 FERM domain containing 6 NM_001042481.3 100% 100%
2 human 122786 FRMD6 FERM domain containing 6 NM_152330.4 100% 100%
3 human 122786 FRMD6 FERM domain containing 6 XM_006720030.1 100% 100%
4 human 122786 FRMD6 FERM domain containing 6 XM_024449476.1 100% 100%
5 human 122786 FRMD6 FERM domain containing 6 NM_001267046.2 98.7% 98.7% 270_293del
6 human 122786 FRMD6 FERM domain containing 6 XM_006720029.1 98.7% 98.7% 270_293del
7 human 122786 FRMD6 FERM domain containing 6 XM_011536423.1 98.7% 98.7% 270_293del
8 human 122786 FRMD6 FERM domain containing 6 XM_011536424.1 98.7% 98.7% 270_293del
9 human 122786 FRMD6 FERM domain containing 6 XM_024449472.1 98.7% 98.7% 270_293del
10 human 122786 FRMD6 FERM domain containing 6 XM_024449473.1 98.7% 98.7% 270_293del
11 human 122786 FRMD6 FERM domain containing 6 XM_024449474.1 98.7% 98.7% 270_293del
12 human 122786 FRMD6 FERM domain containing 6 XM_024449475.1 98.7% 98.7% 270_293del
13 human 122786 FRMD6 FERM domain containing 6 XM_017020968.2 85.8% 84.8% (many diffs)
14 human 122786 FRMD6 FERM domain containing 6 XM_017020967.1 84.7% 83.7% (many diffs)
15 human 122786 FRMD6 FERM domain containing 6 NM_001267047.1 42.9% 42.9% 0_1ins1050
16 mouse 319710 Frmd6 FERM domain containing 6 XM_006515978.1 86.1% 93.4% (many diffs)
17 mouse 319710 Frmd6 FERM domain containing 6 XM_006515979.3 86.1% 93.4% (many diffs)
18 mouse 319710 Frmd6 FERM domain containing 6 NM_028127.3 84.9% 92.2% (many diffs)
19 mouse 319710 Frmd6 FERM domain containing 6 XM_006515977.3 84.9% 92.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1908
ORF length:
1842
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CAAATTGAAT TTTCATAACA ACAGAGTCAT GCAAGACCGC CGCAGTGTGT
121GCATTTTCCT TCCCAACGAT GAATCTCTGA ACATCATCAT AAATGTTAAG ATTCTGTGTC
181ACCAGTTGCT GGTCCAGGTT TGTGACCTGC TCAGGCTAAA GGACTGCCAC CTCTTTGGAC
241TCAGTGTTAT ACAAAATAAT GAACATGTGT ATATGGAGTT GTCACAAAAG CTTTACAAAT
301ATTGTCCAAA AGAATGGAAG AAAGAGGCCA GCAAGGGTAT CGACCAATTT GGGCCTCCTA
361TGATCATCCA CTTCCGTGTG CAGTACTATG TGGAAAATGG CAGATTGATC AGTGACAGAG
421CAGCAAGATA CTATTATTAC TGGCACCTGA GAAAACAAGT TCTTCATTCT CAGTGTGTGC
481TCCGAGAGGA GGCCTACTTC CTGCTGGCAG CCTTTGCCCT GCAGGCTGAT CTTGGGAACT
541TCAAAAGGAA TAAGCACTAT GGAAAATACT TCGAGCCAGA GGCTTACTTC CCATCTTGGG
601TTGTTTCCAA GAGGGGGAAG GACTACATCC TGAAGCACAT TCCAAACATG CACAAAGATC
661AGTTTGCACT AACAGCTTCC GAAGCTCATC TTAAATATAT CAAAGAGGCT GTCCGACTGG
721ATGACGTCGC TGTTCATTAC TACAGATTGT ATAAGGATAA AAGGGAAATT GAAGCATCGC
781TGACTCTTGG ATTGACCATG AGGGGAATAC AGATTTTTCA GAATTTAGAT GAAGAGAAAC
841AATTACTTTA TGATTTCCCC TGGACAAATG TTGGAAAATT GGTGTTTGTG GGTAAGAAAT
901TTGAGATTTT GCCAGATGGC TTGCCTTCTG CCCGGAAGCT CATATACTAC ACGGGGTGCC
961CCATGCGCTC CAGACACCTC CTGCAACTTC TGAGCAACAG CCACCGCCTC TATATGAATC
1021TGCAGCCTGT CCTGCGCCAT ATCCGGAAGC TGGAGGAAAA CGAAGAGAAG AAGCAGTACC
1081GGGAATCTTA CATCAGTGAC AACCTGGACC TCGACATGGA CCAGCTGGAA AAACGGTCGC
1141GGGCCAGCGG GAGCAGTGCG GGCAGCATGA AACACAAGCG CCTGTCCCGT CATTCCACCG
1201CCAGCCACAG CAGTTCCCAC ACCTCGGGCA TTGAGGCAGA CACCAAGCCC CGGGACACGG
1261GGCCAGAAGA CAGCTACTCC AGCAGTGCCA TCCACCGCAA GCTGAAAACC TGCAGCTCAA
1321TGACCAGTCA TGGCAGCTCC CACACCTCAG GGGTGGAGAG TGGCGGCAAA GACCGGCTGG
1381AAGAGGACTT ACAGGACGAT GAAATAGAGA TGTTGGTTGA TGACCCCCGG GATCTGGAGC
1441AGATGAATGA AGAGTCTCTG GAAGTCAGCC CAGACATGTG CATCTACATC ACAGAGGACA
1501TGCTCATGTC GCGGAAGCTG AATGGACACT CTGGGTTGAT TGTGAAAGAA ATTGGGTCTT
1561CCACCTCGAG CTCTTCAGAA ACAGTTGTTA AGCTTCGTGG CCAGAGTACT GATTCTCTTC
1621CACAGACTAT ATGTCGGAAA CCAAAGACCT CCACTGATCG ACACAGCTTG AGCCTCGATG
1681ACATCAGACT TTACCAGAAA GACTTCCTGC GCATTGCAGG TCTGTGTCAG GACACTGCTC
1741AGAGTTACAC CTTTGGATGT GGCCATGAAC TGGATGAGGA AGGCCTCTAT TGCAACAGTT
1801GCTTGGCCCA GCAGTGCATC AACATCCAAG ATGCTTTTCC AGTCAAAAGA ACCAGCAAAT
1861ACTTTTCTCT GGATCTCACT CATGATGAAG TTCCAGAGTT TGTTGTGTAC CCAACTTTCT
1921TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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