Construct: ORF ccsbBroadEn_05835
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003191.1_s300c1, BRDN0000396614
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XIAP (331)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 331 | XIAP | X-linked inhibitor of apopt... | NM_001167.3 | 99.9% | 99.7% | 1485T>G |
| 2 | human | 331 | XIAP | X-linked inhibitor of apopt... | NM_001204401.1 | 99.9% | 99.7% | 1485T>G |
| 3 | human | 331 | XIAP | X-linked inhibitor of apopt... | XM_006724754.2 | 99.9% | 99.7% | 1485T>G |
| 4 | human | 331 | XIAP | X-linked inhibitor of apopt... | XM_011531329.2 | 99.9% | 99.7% | 1485T>G |
| 5 | human | 331 | XIAP | X-linked inhibitor of apopt... | NR_037916.1 | 8.4% | (many diffs) | |
| 6 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | NM_001301639.1 | 89.8% | 89.1% | (many diffs) |
| 7 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | NM_001301641.1 | 89.8% | 89.1% | (many diffs) |
| 8 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | NM_009688.3 | 89.8% | 89.1% | (many diffs) |
| 9 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_006541425.1 | 89.8% | 89.1% | (many diffs) |
| 10 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_006541427.1 | 89.8% | 89.1% | (many diffs) |
| 11 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_011250977.2 | 89.8% | 89.1% | (many diffs) |
| 12 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_017318359.1 | 89.8% | 89.1% | (many diffs) |
| 13 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_017318360.1 | 89.8% | 89.1% | (many diffs) |
| 14 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_017318361.1 | 89.8% | 89.1% | (many diffs) |
| 15 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_017318362.1 | 89.8% | 89.1% | (many diffs) |
| 16 | mouse | 11798 | Xiap | X-linked inhibitor of apopt... | XM_011250976.2 | 81.3% | 80.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1557
- ORF length:
- 1491
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TTTTAACAGT TTTGAAGGAT CTAAAACTTG TGTACCTGCA GACATCAATA 121 AGGAAGAAGA ATTTGTAGAA GAGTTTAATA GATTAAAAAC TTTTGCTAAT TTTCCAAGTG 181 GTAGTCCTGT TTCAGCATCA ACACTGGCAC GAGCAGGGTT TCTTTATACT GGTGAAGGAG 241 ATACCGTGCG GTGCTTTAGT TGTCATGCAG CTGTAGATAG ATGGCAATAT GGAGACTCAG 301 CAGTTGGAAG ACACAGGAAA GTATCCCCAA ATTGCAGATT TATCAACGGC TTTTATCTTG 361 AAAATAGTGC CACGCAGTCT ACAAATTCTG GTATCCAGAA TGGTCAGTAC AAAGTTGAAA 421 ACTATCTGGG AAGCAGAGAT CATTTTGCCT TAGACAGGCC ATCTGAGACA CATGCAGACT 481 ATCTTTTGAG AACTGGGCAG GTTGTAGATA TATCAGACAC CATATACCCG AGGAACCCTG 541 CCATGTATAG TGAAGAAGCT AGATTAAAGT CCTTTCAGAA CTGGCCAGAC TATGCTCACC 601 TAACCCCAAG AGAGTTAGCA AGTGCTGGAC TCTACTACAC AGGTATTGGT GACCAAGTGC 661 AGTGCTTTTG TTGTGGTGGA AAACTGAAAA ATTGGGAACC TTGTGATCGT GCCTGGTCAG 721 AACACAGGCG ACACTTTCCT AATTGCTTCT TTGTTTTGGG CCGGAATCTT AATATTCGAA 781 GTGAATCTGA TGCTGTGAGT TCTGATAGGA ATTTCCCAAA TTCAACAAAT CTTCCAAGAA 841 ATCCATCCAT GGCAGATTAT GAAGCACGGA TCTTTACTTT TGGGACATGG ATATACTCAG 901 TTAACAAGGA GCAGCTTGCA AGAGCTGGAT TTTATGCTTT AGGTGAAGGT GATAAAGTAA 961 AGTGCTTTCA CTGTGGAGGA GGGCTAACTG ATTGGAAGCC CAGTGAAGAC CCTTGGGAAC 1021 AACATGCTAA ATGGTATCCA GGGTGCAAAT ATCTGTTAGA ACAGAAGGGA CAAGAATATA 1081 TAAACAATAT TCATTTAACT CATTCACTTG AGGAGTGTCT GGTAAGAACT ACTGAGAAAA 1141 CACCATCACT AACTAGAAGA ATTGATGATA CCATCTTCCA AAATCCTATG GTACAAGAAG 1201 CTATACGAAT GGGGTTCAGT TTCAAGGACA TTAAGAAAAT AATGGAGGAA AAAATTCAGA 1261 TATCTGGGAG CAACTATAAA TCACTTGAGG TTCTGGTTGC AGATCTAGTG AATGCTCAGA 1321 AAGACAGTAT GCAAGATGAG TCAAGTCAGA CTTCATTACA GAAAGAGATT AGTACTGAAG 1381 AGCAGCTAAG GCGCCTGCAA GAGGAGAAGC TTTGCAAAAT CTGTATGGAT AGAAATATTG 1441 CTATCGTTTT TGTTCCTTGT GGACATCTAG TCACTTGTAA ACAATGTGCT GAAGCAGTTG 1501 ACAAGTGTCC CATGTGCTAC ACAGTCATTA CTTTCAAGCA AAAAATTTTG ATGTCTTACC 1561 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1621 aac