Construct: ORF ccsbBroadEn_06487
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009198.1_s300c1, BRDN0000385909
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR2DL3 (3804)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3804 | KIR2DL3 | killer cell immunoglobulin ... | NM_015868.3 | 99.6% | 99.1% | (many diffs) |
| 2 | human | 3803 | KIR2DL2 | killer cell immunoglobulin ... | NM_014219.2 | 95.1% | 92.8% | (many diffs) |
| 3 | human | 112267881 | LOC112267881 | killer cell immunoglobulin-... | NM_001368251.1 | 92.8% | 88.8% | (many diffs) |
| 4 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | NM_014218.3 | 92.7% | 88.8% | (many diffs) |
| 5 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_012312.4 | 86.9% | 84.7% | (many diffs) |
| 6 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | XM_017030275.2 | 86.9% | 84.7% | (many diffs) |
| 7 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291695.1 | 86% | 83% | (many diffs) |
| 8 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | NM_014512.1 | 84.7% | 80.6% | (many diffs) |
| 9 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_011547998.2 | 84.7% | 80.6% | (many diffs) |
| 10 | human | 102725023 | LOC102725023 | killer cell immunoglobulin-... | NM_001360171.1 | 84.1% | 79.1% | (many diffs) |
| 11 | human | 3810 | KIR2DS5 | killer cell immunoglobulin ... | NM_014513.2 | 84% | 79.4% | (many diffs) |
| 12 | human | 3808 | KIR2DS3 | killer cell immunoglobulin ... | NM_012313.1 | 83.9% | 78.8% | (many diffs) |
| 13 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_012314.6 | 83.5% | 78% | (many diffs) |
| 14 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291701.1 | 82.1% | 80.3% | (many diffs) |
| 15 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026782.1 | 78% | 74.4% | (many diffs) |
| 16 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282170.1 | 76% | 63.9% | (many diffs) |
| 17 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452542.1 | 74.7% | 67.1% | (many diffs) |
| 18 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282171.1 | 73.4% | 61.9% | (many diffs) |
| 19 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_001322168.1 | 70.9% | 64.4% | (many diffs) |
| 20 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_013289.2 | 70.8% | 64.4% | (many diffs) |
| 21 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026783.1 | 69.6% | 62.9% | (many diffs) |
| 22 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452543.1 | 69.5% | 65.9% | (many diffs) |
| 23 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452544.1 | 69.5% | 65.9% | (many diffs) |
| 24 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452545.1 | 69.5% | 65.9% | (many diffs) |
| 25 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_006737.4 | 68.8% | 63.2% | (many diffs) |
| 26 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281971.2 | 65.8% | 45.7% | (many diffs) |
| 27 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_001242867.2 | 65.5% | 60.4% | (many diffs) |
| 28 | human | 115653 | KIR3DL3 | killer cell immunoglobulin ... | NM_153443.4 | 64.8% | 57.7% | (many diffs) |
| 29 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_017030286.1 | 64.4% | 60.4% | (many diffs) |
| 30 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_011526939.2 | 64.2% | 60.1% | (many diffs) |
| 31 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_011526940.3 | 61.8% | 56.7% | (many diffs) |
| 32 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281972.2 | 61% | 44.6% | (many diffs) |
| 33 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001083539.2 | 59.8% | 50.2% | (many diffs) |
| 34 | human | 112268355 | LOC112268355 | killer cell immunoglobulin-... | NM_001368254.1 | 59.8% | 50.2% | (many diffs) |
| 35 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291696.1 | 57.8% | 56% | (many diffs) |
| 36 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | XM_017030274.1 | 56.7% | 44.6% | (many diffs) |
| 37 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_017026784.2 | 51% | 46.2% | (many diffs) |
| 38 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291700.1 | 25.6% | 27.2% | (many diffs) |
| 39 | human | 107987438 | LOC107987438 | uncharacterized LOC107987438 | XR_001756645.1 | 24.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1089
- ORF length:
- 1023
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GCTCATTGTC GTCAGCATGG TGTGTGTTGG GTTCTTCTTG CTGCAGGGGG 121 CCTGGCCACA TGAGGGAGTC CACAGAAAAC CTTCCCTCCT GGCCCACCCA GGTCCCCTGG 181 TGAAATCAGA AGAGACAGTC ATCCTGCAAT GTTGGTCAGA TGTCAGGTTT CAGCACTTCC 241 TTCTGCACAG AGAAGGGAAG TTTAAGGACA CTTTGCACCT CATTGGAGAG CACCATGATG 301 GGGTCTCCAA GGCCAACTTC TCCATCGGTC CCATGATGCA AGACCTTGCA GGGACCTACA 361 GATGCTACGG TTCTGTTACT CACTCCCCCT ATCAGTTGTC AGCTCCCAGT GACCCTCTGG 421 ACATCGTCAT CACAGGTCTA TATGAGAAAC CTTCTCTCTC AGCCCAGCCG GGCCCCACGG 481 TTCTGGCAGG AGAGAGCGTG ACCTTGTCCT GCAGCTCCCG GAGCTCCTAT GACATGTACC 541 ATCTATCCAG GGAGGGGGAG GCCCATGAAC GTAGGTTCTC TGCAGGGCCC AAGGTCAACG 601 GAACATTCCA GGCCGACTTT CCTCTGGGCC CTGCCACCCA CGGAGGAACC TACAGATGCT 661 TCGGCTCTTT CCGTGACTCT CCATACGAGT GGTCAAACTC GAGTGACCCA CTGCTTGTTT 721 CTGTCACAGG AAACCCTTCA AATAGTTGGC TTTCACCCAC TGAACCAAGC TCCGAAACCG 781 GTAACCCCAG ACACCTGCAT GTTCTGATTG GGACCTCAGT GGTCATCATC CTCTTCATCC 841 TCCTCCTCTT CTTTCTCCTT CATCGCTGGT GCTGCAACAA AAAAAATGCT GTTGTAATGG 901 ACCAAGAGCC TGCAGGGAAC AGAACAGTGA ACAGGGAGGA CTCTGATGAA CAAGACCCTC 961 AGGAGGTGAC ATATGCACAG TTGAATCACT GCGTTTTCAC ACAGAGAAAA ATCACTCACC 1021 CTTCTCAGAG GCCCAAGACA CCCCCAACAG ATATCATCGT GTACACGGAA CTTCCTAATG 1081 CTGAGCCCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1141 tttgttgcaa cgaac