Construct: ORF ccsbBroadEn_06791

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011137.1_s300c1, BRDN0000392602
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG5 (5673)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5673 PSG5 pregnancy specific beta-1-g... NM_001130014.2 99.2% 98.8% (many diffs)
2 human 5673 PSG5 pregnancy specific beta-1-g... NM_002781.4 99.2% 98.8% (many diffs)
3 human 5673 PSG5 pregnancy specific beta-1-g... XM_017027003.1 99.2% 98.8% (many diffs)
4 human 5669 PSG1 pregnancy specific beta-1-g... NM_001330524.2 90.9% 82.5% (many diffs)
5 human 5672 PSG4 pregnancy specific beta-1-g... NM_001276495.1 90.5% 84% (many diffs)
6 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301707.2 90.3% 79.3% (many diffs)
7 human 5669 PSG1 pregnancy specific beta-1-g... XM_005259065.4 90.2% 82.6% (many diffs)
8 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027001.2 89.7% 84.1% (many diffs)
9 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 86.3% 74.3% (many diffs)
10 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 84.6% 71.9% (many diffs)
11 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 84.3% 68.6% (many diffs)
12 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 84.2% 71% (many diffs)
13 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 83.2% 72.4% (many diffs)
14 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 83.1% 70.5% (many diffs)
15 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 82.5% 72.6% (many diffs)
16 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 82.1% 70.5% (many diffs)
17 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027005.2 76.2% 67.9% (many diffs)
18 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 73.9% 68.9% (many diffs)
19 human 5676 PSG7 pregnancy specific beta-1-g... NM_001206650.2 72.4% 58.6% (many diffs)
20 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130168.2 72.2% 58.6% (many diffs)
21 human 5672 PSG4 pregnancy specific beta-1-g... NM_001316339.2 71.6% 58.6% (many diffs)
22 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 71.5% 66% (many diffs)
23 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 71.4% 65.4% (many diffs)
24 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 71.4% 65.2% (many diffs)
25 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 71.3% 58.7% (many diffs)
26 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 71.3% 65.3% (many diffs)
27 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 71.3% 65.6% (many diffs)
28 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 71.3% 64.9% (many diffs)
29 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 71% 66.1% (many diffs)
30 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 71% 65.1% (many diffs)
31 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 70.9% 65.1% (many diffs)
32 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 70.8% 62.7% (many diffs)
33 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 70.6% 66.2% (many diffs)
34 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 70.1% 64.3% (many diffs)
35 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 69.1% 62% (many diffs)
36 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526988.2 66% 53.3% (many diffs)
37 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301709.2 64.6% 55.8% (many diffs)
38 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 61.9% 55.3% (many diffs)
39 human 5673 PSG5 pregnancy specific beta-1-g... XM_011527132.3 60.8% 48.8% (many diffs)
40 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 59.3% 47.7% (many diffs)
41 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027006.2 54.6% 47.7% (many diffs)
42 human 653492 PSG10P pregnancy specific beta-1-g... NR_026824.1 54.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG ACCCCTCTCA GCCCCTCCCT GCACACAGCA CATCACCTGG AAGGGGGTCC
121TGCTCACAGC ATCACTTTTA AACTTCTGGA ACCTGCCTAT CACTGCTCAA GTCACGATTG
181AAGCCCTGCC ACCCAAAGTT TCCGAGGGGA AGGATGTTCT TCTACTTGTC CACAATTTGC
241CTCAGAATCT TGCTGGCTAC ATCTGGTACA AAGGACAACT GATGGACCTC TACCATTACA
301TTACATCATA TGTAGTAGAC GGTCAAATAA ATATATATGG GCCTGCATAC ACTGGACGAG
361AAACAGTATA TTCCAATGCA TCCCTGCTGA TCCAGAATGT CACCCGGGAA GACGCAGGAT
421CCTATACCTT ACACATCATA AAGCGAGGTG ATAGGACTAG AGGAGTAACT GGATATTTCA
481CCTTCAACTT ATACCTGAAG CTGCCCAAGC CCTACATCAC CATCAACAAC TCAAAACCCA
541GGGAGAATAA GGATGTCTTA GCCTTCACCT GTGAACCTAA GAGTGAGAAC TACACCTACA
601TTTGGTGGCT AAATGGTCAG AGCCTCCCGG TCAGTCCCAG GGTAAAGCAA CCCATTGAAA
661ACAGGATCCT CATTCTACCC AGTGTCACGA GAAATGAAAC AGGACCCTAT GAATGTGAAA
721TACGGGACCG AGATGGTGGC ATGCACAGTG ACCCAGTCAC CCTGAATGTC CTCTATGGTC
781CAGACCTCCC CAGCATTTAC CCTTCATTCA CCTATTACCG TTCAGGAGAA AACCTCTACT
841TGTCCTGCTT CGCGGAATCT AACCCACCGG CAGAGTATTT TTGGACAATT AATGGGAAGT
901TTCAGCAATC AGGACAAAAG CTCTCTATCC CCCAAATTAC TACAAAGCAT AGAGGGCTCT
961ATACTTGCTC TGTTCGTAAC TCAGCCACTG GCAAGGAAAG CTCCAAATCC ATGACAGTCG
1021AAGTCTCTGC TCCTTCAGGA ATAGGACGTC TACCTCTCAT TAATCCAATA TACCCAACTT
1081TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)