Construct: ORF ccsbBroadEn_07016
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008771.1_s300c1, BRDN0000398010
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SULT1A3 (6818)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 445329 | SULT1A4 | sulfotransferase family 1A ... | NM_001017390.2 | 99.7% | 99.6% | 4G>A;252C>T |
| 2 | human | 6818 | SULT1A3 | sulfotransferase family 1A ... | NM_177552.3 | 99.7% | 99.6% | 4G>A;252C>T |
| 3 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_001055.3 | 94.2% | 92.5% | (many diffs) |
| 4 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177529.2 | 94.2% | 92.5% | (many diffs) |
| 5 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177530.2 | 94.2% | 92.5% | (many diffs) |
| 6 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177534.2 | 94.2% | 92.5% | (many diffs) |
| 7 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023611.2 | 94.2% | 92.5% | (many diffs) |
| 8 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023612.2 | 94.2% | 92.5% | (many diffs) |
| 9 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023613.2 | 94.2% | 92.5% | (many diffs) |
| 10 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450409.1 | 94.2% | 92.5% | (many diffs) |
| 11 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450410.1 | 94.2% | 92.5% | (many diffs) |
| 12 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450411.1 | 94.2% | 92.5% | (many diffs) |
| 13 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_177528.2 | 93.3% | 90.1% | (many diffs) |
| 14 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_001054.4 | 93.2% | 89.8% | (many diffs) |
| 15 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023604.1 | 92.3% | 90.6% | (many diffs) |
| 16 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023605.1 | 92.3% | 90.6% | (many diffs) |
| 17 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023608.1 | 92.3% | 90.6% | (many diffs) |
| 18 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023609.1 | 92.3% | 90.6% | (many diffs) |
| 19 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023610.1 | 92.3% | 90.6% | (many diffs) |
| 20 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023607.2 | 72% | 70.7% | (many diffs) |
| 21 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450408.1 | 71.8% | 70.5% | (many diffs) |
| 22 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_001363863.1 | 67.6% | 61.9% | (many diffs) |
| 23 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177536.3 | 64.6% | 50.7% | (many diffs) |
| 24 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XR_001751973.1 | 61.4% | (many diffs) | |
| 25 | human | 100526831 | SLX1B-SULT1A4 | SLX1B-SULT1A4 readthrough (... | NR_037609.1 | 39.8% | (many diffs) | |
| 26 | human | 100526830 | SLX1A-SULT1A3 | SLX1A-SULT1A3 readthrough (... | NR_037608.1 | 39.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 951
- ORF length:
- 885
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GCTGATCCAG GACACCTCCC GCCCGCCACT GGAGTACGTG AAGGGGGTCC 121 CGCTCATCAA GTACTTTGCA GAGGCACTGG GGCCCCTGCA GAGCTTCCAA GCCCGACCTG 181 ATGACCTGCT CATCAACACC TACCCCAAGT CTGGCACCAC CTGGGTGAGC CAGATACTGG 241 ACATGATCTA CCAGGGCGGC GACCTAGAGA AGTGTAACCG GGCTCCCATC TACGTACGGG 301 TGCCCTTCCT TGAGGTTAAT GATCCAGGGG AACCCTCAGG GCTGGAGACT CTGAAAGACA 361 CACCGCCCCC ACGGCTCATC AAGTCACACC TGCCCCTGGC TCTGCTCCCT CAGACTCTGT 421 TGGATCAGAA GGTCAAGGTG GTCTATGTTG CCCGAAACCC AAAGGACGTG GCGGTCTCCT 481 ACTACCATTT CCACCGTATG GAAAAGGCGC ACCCTGAGCC TGGGACCTGG GACAGCTTCC 541 TGGAAAAGTT CATGGCTGGA GAAGTGTCCT ACGGGTCCTG GTACCAGCAC GTGCAGGAGT 601 GGTGGGAGCT GAGCCGCACC CACCCTGTTC TCTACCTCTT CTATGAAGAC ATGAAGGAGA 661 ACCCCAAAAG GGAGATTCAA AAGATCCTGG AGTTTGTGGG GCGCTCCCTG CCAGAGGAGA 721 CCATGGACTT CATGGTTCAG CACACGTCGT TCAAGGAGAT GAAGAAGAAC CCTATGACCA 781 ACTACACCAC CGTCCCCCAG GAGCTCATGG ACCACAGCAT CTCCCCCTTC ATGAGGAAAG 841 GCATGGCTGG GGACTGGAAG ACCACCTTCA CCGTGGCGCA GAATGAGCGC TTCGATGCGG 901 ACTATGCGGA GAAGATGGCA GGCTGCAGCC TCAGCTTCCG CTCTGAGCTG TGCCCAACTT 961 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac