Construct: ORF ccsbBroadEn_10684

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014337.1_s300c1, BRDN0000394143
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AQP7 (364)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 364 AQP7 aquaporin 7 NM_001318156.1 100% 100%
2 human 364 AQP7 aquaporin 7 XM_017014706.2 91.3% 89.3% (many diffs)
3 human 112267859 LOC112267859 putative aquaporin-7-like p... XM_024447730.1 85.6% 81.7% (many diffs)
4 human 364 AQP7 aquaporin 7 XM_024447539.1 83.7% 83.7% 0_1ins105
5 human 364 AQP7 aquaporin 7 XM_024447535.1 79.1% 79.1% 1_171del
6 human 364 AQP7 aquaporin 7 XM_024447536.1 79.1% 79.1% 1_171del
7 human 364 AQP7 aquaporin 7 XM_006716765.3 75.7% 68.1% 571_629del;708_855del
8 human 364 AQP7 aquaporin 7 XM_011517867.2 75.7% 68.1% 571_629del;708_855del
9 human 112267859 LOC112267859 putative aquaporin-7-like p... XM_024447731.1 75.3% 71.8% (many diffs)
10 human 364 AQP7 aquaporin 7 NM_001318157.1 72.5% 70.9% (many diffs)
11 human 364 AQP7 aquaporin 7 NM_001318158.1 72.2% 70.6% (many diffs)
12 human 112267859 LOC112267859 putative aquaporin-7-like p... XM_024447729.1 66.5% 56.4% (many diffs)
13 human 364 AQP7 aquaporin 7 XM_017014701.1 63.5% 56% 0_1ins105;466_524del;603_750del
14 human 364 AQP7 aquaporin 7 XM_017014702.2 63.5% 56% 0_1ins105;466_524del;603_750del
15 human 364 AQP7 aquaporin 7 XM_017014704.1 63.5% 56% 0_1ins105;466_524del;603_750del
16 human 364 AQP7 aquaporin 7 XM_017014705.2 63.5% 56% 0_1ins105;466_524del;603_750del
17 human 364 AQP7 aquaporin 7 XM_024447537.1 63.5% 56% 0_1ins105;466_524del;603_750del
18 human 364 AQP7 aquaporin 7 XM_024447538.1 63.5% 56% 0_1ins105;466_524del;603_750del
19 human 364 AQP7 aquaporin 7 XM_017014700.1 63.3% 57.1% 1_168del;739_797del;876_1023del
20 human 364 AQP7 aquaporin 7 NM_001170.3 63.1% 56.9% 1_171del;742_800del;879_1026del
21 human 364 AQP7 aquaporin 7 XM_005251453.3 63.1% 56.9% 1_171del;742_800del;879_1026del
22 human 364 AQP7 aquaporin 7 XM_011517866.3 63.1% 56.9% 1_171del;742_800del;879_1026del
23 human 100509620 LOC100509620 putative aquaporin-7-like p... XM_006712887.3 55.2% 48% (many diffs)
24 human 100509620 LOC100509620 putative aquaporin-7-like p... XM_017005469.2 42.5% 33.5% (many diffs)
25 human 100509620 LOC100509620 putative aquaporin-7-like p... XM_017005468.2 40% 23.7% (many diffs)
26 human 364 AQP7 aquaporin 7 NR_134514.1 36.6% (many diffs)
27 human 364 AQP7 aquaporin 7 NR_134515.1 34.3% (many diffs)
28 human 112267859 LOC112267859 putative aquaporin-7-like p... XM_024447732.1 31.2% 23.1% (many diffs)
29 human 364 AQP7 aquaporin 7 NR_134513.1 29.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
714
ORF length:
648
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT TCTAAATAAA AAATATGGGA GCTACCTTGG TGTCAACTTG GGTTTTGGCT
121TCGGAGTCAC CATGGGAGTG CACGTGGCAG GCCGCATCTC TGGAGCCCAC ATGAACGCAG
181CTGTGACCTT TGCTAACTGT GCGCTGGGCC GCGTGCCCTG GAGGAAGTTT CCGGTCTATG
241TGCTGGGGCA GTTCCTGGGC TCCTTCCTGG CGGCTGCCAC CATCTACAGT CTCTTCTACA
301CGGCCATTCT CCACTTTTCG GGTGGACAGC TGATGGTGAC CGGTCCCGTC GCTACAGCTG
361GCATTTTTGC CACCTACCTT CCTGATCACA TGACATTGTG GCGGGGCTTC CTGAATGAGG
421CGTGGCTGAC CGGGATGCTC CAGCTGTGTC TCTTCGCCAT CACGGACCAG GAGAACAACC
481CAGCACTGCC AGGAACAGAG GCGCTGGTGA TAGGCATCCT CGTGGTCATC ATCGGGGTGT
541CCCTTGGCAT GAACACAGGA TATGCCATCA ACCCGTCCCG GGACCTGCCC CCCCGCATCT
601TCACCTTCAT TGCTGGTTGG GGCAAACAGG TCTTCAGGTG GCATCATCTA CCTGGTCTTC
661ATTGGCTCCA CCATCCCACG GGAGCCCCTG AAATTGGAGG ATTCTGTGGC GTATGCCCAA
721CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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