Construct: ORF ccsbBroadEn_10748

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012920.1_s300c1, BRDN0000391718
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CRAT (1384)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1384 CRAT carnitine O-acetyltransferase NM_000755.5 86.8% 86.7% 840_1085del;1114C>A
2 human 1384 CRAT carnitine O-acetyltransferase XM_024447414.1 85.7% 85.4% (many diffs)
3 human 1384 CRAT carnitine O-acetyltransferase XM_017014275.1 85.3% 85.3% (many diffs)
4 human 1384 CRAT carnitine O-acetyltransferase NM_001346546.2 85.3% 85.6% (many diffs)
5 human 1384 CRAT carnitine O-acetyltransferase NM_001257363.3 83.4% 83.3% 0_1ins63;777_1022del;1051C>A
6 human 1384 CRAT carnitine O-acetyltransferase NM_004003.4 83.4% 83.3% 0_1ins63;777_1022del;1051C>A
7 human 1384 CRAT carnitine O-acetyltransferase XM_005251708.4 83.4% 83.3% 0_1ins63;777_1022del;1051C>A
8 human 1384 CRAT carnitine O-acetyltransferase NM_001346547.2 83% 82.9% 840_1085del;1114C>A;1592_1593ins72
9 human 1384 CRAT carnitine O-acetyltransferase NM_001346549.2 80.4% 80.3% 171_172ins120;720_965del;994C>A
10 human 1384 CRAT carnitine O-acetyltransferase NM_001346548.2 79.6% 79.5% (many diffs)
11 mouse 12908 Crat carnitine acetyltransferase NM_007760.3 75.7% 79.8% (many diffs)
12 mouse 12908 Crat carnitine acetyltransferase XM_006497645.2 75.1% 79.2% (many diffs)
13 mouse 12908 Crat carnitine acetyltransferase XM_006497646.3 73.7% 78.1% (many diffs)
14 mouse 12908 Crat carnitine acetyltransferase XM_006497647.1 72.2% 76.2% (many diffs)
15 mouse 12908 Crat carnitine acetyltransferase XM_006497648.2 72.2% 76.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1698
ORF length:
1632
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT AGCCTTCGCT GCCAGGACCG TGGTGAAGCC TCTGGGCTTC CTGAAGCCCT
121TCTCCTTGAT GAAGGCTTCC AGCCGCTTCA AGGCACACCA GGATGCACTG CCACGGCTGC
181CCGTGCCCCC TCTCCAGCAG TCCCTGGACC ACTACCTGAA GGCGCTGCAG CCCATCGTGA
241GTGAGGAGGA GTGGGCCCAC ACCAAGCAGC TGGTGGATGA GTTTCAGGCC TCAGGAGGTG
301TAGGGGAGCG CCTGCAGAAG GGGCTGGAGC GTCGGGCCAG GAAGACGGAG AACTGGCTGT
361CTGAGTGGTG GCTCAAGACC GCCTACCTCC AGTACCGCCA GCCTGTGGTC ATCTACTCGA
421GCCCAGGCGT GATGCTACCC AAGCAGGACT TCGTGGACCT GCAGGGTCAG CTCCGATTTG
481CTGCCAAACT CATTGAGGGT GTGTTGGATT TCAAGGTCAT GATTGACAAC GAGACCCTGC
541CCGTGGAGTA CCTGGGGGGG AAGCCACTGT GCATGAACCA GTACTATCAG ATCTTGTCCT
601CCTGCCGAGT GCCGGGCCCC AAGCAGGACA CAGTCAGCAA CTTCAGCAAG ACCAAGAAGC
661CTCCCACGCA CATCACCGTG GTACACAACT ACCAGTTTTT TGAGCTGGAT GTGTACCACA
721GTGACGGGAC ACCCCTCACT GCGGATCAGA TCTTTGTGCA GCTGGAGAAG ATCTGGAACT
781CATCCCTACA GACCAACAAG GAGCCTGTGG GCATCCTCAC CTCCAACCAC CGCAACTCCT
841GGGCCAAGGC ATACAACACC CTCATCAAAG ACAAGGTGAA CCGGGATTCC GTGCGCTCCA
901TCCAGAAGAA ACCCGAGCTT GTGCGGTCTC CCATGGTGCC CCTGCCCATG CCCAAGAAGC
961TGCGGTTCAA CATCACCCCC GAGATCAAGA GCGACATCGA GAAGGCCAAG CAGAACCTCA
1021GCATCATGAT CCAGGACCTG GATATCACCG TGATGGTGTT CCACCATTTT GGAAAAGACT
1081TCCCCAAGTC GGAGAAGCTA AGCCCAGATG CCTTCATCCA GATGGCTTTG CAGCTGGCCT
1141ACTACAGGAT CTACGGACAG GCATGTGCCA CCTATGAAAG TGCCTCCCTG CGCATGTTTC
1201ACCTGGGCCG CACCGACACC ATCCGCTCGG CTTCCATGGA CTCACTCACC TTTGTCAAGG
1261CCATGGATGA CTCCAGCGTC ACGGAGCACC AGAAGGTGGA GCTGCTGCGG AAGGCCGTGC
1321AGGCCCACCG AGGCTACACC GACCGGGCCA TCCGCGGGGA GGCCTTTGAT CGACACCTGC
1381TGGGCCTGAA GCTGCAGGCC ATCGAGGACC TGGTGAGCAT GCCCGACATC TTCATGGACA
1441CCTCCTACGC CATCGCCATG CACTTCCACC TCTCCACCAG CCAGGTCCCT GCCAAGACAG
1501ACTGTGTCAT GTTCTTCGGG CCCGTGGTCC CCGACGGCTA CGGTGTCTGC TATAACCCCA
1561TGGAGGCCCA CATCAACTTC TCCCTGTCGG CCTACAACAG CTGCGCGGAG ACCAACGCCG
1621CCCGCCTGGC GCATTACCTG GAGAAGGCGC TCCTGGACAT GCGTGCCCTG CTGCAGAGCC
1681ACCCCCGGGC CAAGCTCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1741gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)