Construct: ORF ccsbBroadEn_10936
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009068.1_s300c1, BRDN0000390581
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR2DL1 (3802)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | NM_014218.3 | 93% | 92.7% | 715_716ins78 |
| 2 | human | 112267881 | LOC112267881 | killer cell immunoglobulin-... | NM_001368251.1 | 92.2% | 91.1% | (many diffs) |
| 3 | human | 3803 | KIR2DL2 | killer cell immunoglobulin ... | NM_014219.2 | 90.2% | 88.2% | (many diffs) |
| 4 | human | 3804 | KIR2DL3 | killer cell immunoglobulin ... | NM_015868.3 | 86.6% | 82.9% | (many diffs) |
| 5 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291695.1 | 79.8% | 76.1% | (many diffs) |
| 6 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026782.1 | 78.8% | 78.6% | 0_1ins159;556_557ins78 |
| 7 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_011547998.2 | 78.3% | 76.2% | (many diffs) |
| 8 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | NM_014512.1 | 78.1% | 76% | (many diffs) |
| 9 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_012312.4 | 76.6% | 73.6% | (many diffs) |
| 10 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | XM_017030275.2 | 76.6% | 73.6% | (many diffs) |
| 11 | human | 3810 | KIR2DS5 | killer cell immunoglobulin ... | NM_014513.2 | 76.2% | 72% | (many diffs) |
| 12 | human | 102725023 | LOC102725023 | killer cell immunoglobulin-... | NM_001360171.1 | 76.1% | 72.2% | (many diffs) |
| 13 | human | 3808 | KIR2DS3 | killer cell immunoglobulin ... | NM_012313.1 | 75.9% | 72% | (many diffs) |
| 14 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_012314.6 | 75.4% | 70.9% | (many diffs) |
| 15 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452542.1 | 73.2% | 70.5% | (many diffs) |
| 16 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291701.1 | 72.1% | 69.3% | (many diffs) |
| 17 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282170.1 | 68.7% | 58.7% | (many diffs) |
| 18 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_001322168.1 | 68.3% | 62.3% | (many diffs) |
| 19 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_013289.2 | 68.2% | 62.3% | (many diffs) |
| 20 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026783.1 | 66.6% | 63.1% | (many diffs) |
| 21 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_006737.4 | 66.6% | 60.4% | (many diffs) |
| 22 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282171.1 | 66.3% | 56.9% | (many diffs) |
| 23 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452543.1 | 64.2% | 62.1% | (many diffs) |
| 24 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452544.1 | 64.2% | 62.1% | (many diffs) |
| 25 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452545.1 | 64.2% | 62.1% | (many diffs) |
| 26 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_001242867.2 | 63.2% | 57.5% | (many diffs) |
| 27 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_011526939.2 | 61.4% | 60.1% | (many diffs) |
| 28 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_017030286.1 | 60.6% | 58.5% | (many diffs) |
| 29 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_011526940.3 | 60.1% | 54.3% | (many diffs) |
| 30 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281971.2 | 59.8% | 37.5% | (many diffs) |
| 31 | human | 115653 | KIR3DL3 | killer cell immunoglobulin ... | NM_153443.4 | 59.4% | 52.5% | (many diffs) |
| 32 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001083539.2 | 55.2% | 47% | (many diffs) |
| 33 | human | 112268355 | LOC112268355 | killer cell immunoglobulin-... | NM_001368254.1 | 55.2% | 47% | (many diffs) |
| 34 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281972.2 | 55.1% | 40.6% | (many diffs) |
| 35 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | XM_017030274.1 | 53.7% | 41.7% | (many diffs) |
| 36 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291696.1 | 51.4% | 49.8% | (many diffs) |
| 37 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_017026784.2 | 47.7% | 43% | (many diffs) |
| 38 | human | 107987438 | LOC107987438 | uncharacterized LOC107987438 | XR_001756645.1 | 25.3% | (many diffs) | |
| 39 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291700.1 | 22.7% | 25.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1188
- ORF length:
- 1122
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GCTCTTGGTC GTCAGCATGG CGTGTGTTGG GTTCTTCTTG CTGCAGGGGG 121 CCTGGCCACA TGAGGGAGTC CACAGAAAAC CTTCCCTCCT GGCCCACCCA GGTCGCCTGG 181 TGAAATCAGA AGAGACAGTC ATCCTGCAGT GTTGGTCAGA TGTCATGTTT GAACACTTCC 241 TTCTGCACAG AGAGGGGATG TTTAACGACA CTTTGCGCCT CATTGGAGAA CACCATGATG 301 GGGTCTCCAA GGCCAACTTC TCCATCAGTC GCATGACGCA AGACCTGGCA GGGACCTACA 361 GATGCTACGG TTCTGTTACT CACTCCCCCT ATCAGGTGTC AGCTCCCAGT GACCCTCTGG 421 ACATCGTGAT CATAGGTCTA TATGAGAAAC CTTCTCTCTC AGCCCAGCTG GGCCCCACGG 481 TTCTGGCAGG AGAGAATGTG ACCTTGTCCT GCAGCTCCCG GAGCTCCTAT GACATGTACC 541 ATCTATCCAG GGAAGGGGAG GCCCATGAAC GTAGGCTCCC TGCAGGGCCC AAGGTCAACG 601 GAACATTCCA GGCTGACTTT CCTCTGGGCC CTGCCACCCA CGGAGGGACC TACAGATGCT 661 TCGGCTCTTT CCATGACTCT CCATACGAGT GGTCAAAGTC AAGTGACCCA CTGCTTGTTT 721 CTGTCACAGG AAACCCTTCA AATAGTTGGC CTTCACCCAC TGAACCAAGC TCCAAAACCG 781 AGAGGATGTT TCACCACGTT GGCCAAGCTT GTCTGAAACT CCCAACCTCA AGTGATCCGA 841 CCGTCTCAGC ATGCCAAAGT AACCCCCGAC ACCTGCACAT TCTGATTGGG ACCTCAGTGG 901 TCATCATCCT CTTCATCCTC CTCTTCTTTC TCCTTCATCG CTGGTGCTCC AACAAAAAAA 961 ATGCTGCGGT AATGGACCAA GAGTCTGCAG GAAACAGAAC AGCGAATAGC GAGGACTCTG 1021 ATGAACAAGA CCCTCAGGAG GTGACATACA CACAGTTGAA TCACTGCGTT TTCACACAGA 1081 GAAAAATCAC TCGCCCTTCT CAGAGGCCCA AGACACCCCC AACAGATATC ATCGTGTACA 1141 CGGAACTTCC AAATGCTGAG TCCAGATCCA AAGTTGTCTC CTGCCCATGC CCAACTTTCT 1201 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac