Construct: ORF ccsbBroadEn_12296

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013989.1_s300c1, BRDN0000390008
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF253 (56242)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56242 ZNF253 zinc finger protein 253 NM_001331134.1 100% 100%
2 human 56242 ZNF253 zinc finger protein 253 NM_001331133.1 97.2% 97.2% 1_36del
3 human 56242 ZNF253 zinc finger protein 253 NM_021047.3 84.7% 84.7% 1_228del
4 human 100129842 ZNF737 zinc finger protein 737 XM_017026117.2 74.3% 62.7% (many diffs)
5 human 100129842 ZNF737 zinc finger protein 737 XM_017026116.1 71.7% 60.5% (many diffs)
6 human 440515 ZNF506 zinc finger protein 506 NM_001145404.2 69.2% 59.1% (many diffs)
7 human 199777 ZNF626 zinc finger protein 626 NM_001076675.3 68.9% 58.1% (many diffs)
8 human 7639 ZNF85 zinc finger protein 85 NM_001256173.1 68.2% 56.3% (many diffs)
9 human 7639 ZNF85 zinc finger protein 85 XM_011528264.1 67.5% 55.7% (many diffs)
10 human 100129842 ZNF737 zinc finger protein 737 NM_001159293.2 67.4% 56.9% (many diffs)
11 human 100129842 ZNF737 zinc finger protein 737 XM_006722597.4 65.7% 55.4% (many diffs)
12 human 100129842 ZNF737 zinc finger protein 737 XM_011527599.3 65.7% 55.4% (many diffs)
13 human 100129842 ZNF737 zinc finger protein 737 XM_005259697.4 65.6% 55.3% (many diffs)
14 human 100129842 ZNF737 zinc finger protein 737 XM_011527598.3 65.6% 55.3% (many diffs)
15 human 440515 ZNF506 zinc finger protein 506 NM_001099269.3 64.8% 55.4% (many diffs)
16 human 90649 ZNF486 zinc finger protein 486 NM_052852.4 63.3% 52.4% (many diffs)
17 human 7639 ZNF85 zinc finger protein 85 NM_003429.5 60.9% 50.2% (many diffs)
18 human 7639 ZNF85 zinc finger protein 85 NM_001256171.1 57.9% 47.8% (many diffs)
19 human 7639 ZNF85 zinc finger protein 85 XM_011528263.2 56.6% 46.7% (many diffs)
20 human 100129842 ZNF737 zinc finger protein 737 XR_001753570.2 50.5% (many diffs)
21 human 7608 ZNF56 zinc finger protein 56 NM_001355194.2 49% 38.6% (many diffs)
22 human 284443 ZNF493 zinc finger protein 493 NM_175910.7 46.9% 37.5% (many diffs)
23 human 105372319 LOC105372319 zinc finger protein 430-like XM_017027571.1 38.1% 25.5% (many diffs)
24 human 664701 ZNF826P zinc finger protein 826, ps... NR_036455.1 21.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1335
ORF length:
1269
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TTCTCATTTT GCCCAAGACC TTTGGCCAGA GAACATACAA AATTCTTTCC
121AAATAGGGAT GCTGAGAAGA TATGAAGAAT GCAGACATGA CAATTTACAG TTAAAAAAAG
181GCTGTAAAAG CGTGGGTGAG CATAAGGTGC ACAAAGGAGG TTATAATGGA CTTAACCAAT
241GTTTGACAAC TACCCAGAAA GAAATATTTC AATGTGATAA ATATGGAAAA GTCTTTCATA
301AGTTTTCAAA TTCAAACACA TATAAGACAA GACATACTGG AATAAATCTT TTCAAATGTA
361TAATATGTGG CAAAGCTTTT AAACGGTCCT CAACCCTTAC TACACATAAG AAAATTCATA
421CTGGAGAGAA ACCTTACAGA TGTGAAGAAT GTGGCAAAGC TTTTAACCAA TCTGCAAACC
481TTACTACACA TAAGAGAATT CATACCGGAG AGAAACCCTA CAGATGTGAA GAATGTGGCA
541AAGCCTTTAA GCAGTCCTCA AACCTTACTA CACATAAGAA AATTCATACT GGAGAGAAAC
601CCTACAAATG TGAAGAATGT GGCAAAGCCT TCAACCGATC CACAGACCTT ACTACACATA
661AGATAGTTCA TACTGGAGAG AAACCCTACA AATGTGAAGA ATGTGGCAAA GCCTTTAAGC
721ACCCCTCACA CGTTACCACA CATAAGAAAA TTCATACTAG AGGGAAACCC TACAACTGTG
781AAGAATGTGG CAAATCCTTT AAGCACTGCT CTAACCTTAC TATACATAAG AGAATTCATA
841CAGGAGAGAA ACCCTACAAA TGTGAAGAAT GTGGCAAAGC CTTTCACCTA TCCTCACACC
901TTACTACACA TAAGATACTT CATACTGGAG AGAAACCCTA CAGATGTAGA GAATGTGGCA
961AAGCTTTTAA CCATTCCACA ACCCTTTTTT CACATGAGAA AATTCATACT GGAGAGAAAC
1021CCTACAAATG TGATGAATGT GGCAAAACCT TTACCTGGCC CTCAATCCTC TCCAAACATA
1081AAAGAACTCA TACTGGAGAG AAACCCTACA AATGTGAAGA ATGTGGCAAA TCCTTTACTG
1141CATCCTCAAC TCTAACTACA CATAAGAGAA TTCATACTGG AGAGAAACCT TACAAATGTG
1201AAGAATGTGG CAAAGCTTTT AACTGGTCCT CAGACCTTAA TAAACATAAG AAAATTCATA
1261TTGAACGAAA ACCCTACATA GTGAAGAATG TGACAGATCT TTTAAATGTT CCTCCACTTT
1321TAATTAGCAT AAGATACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1381tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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