Construct: ORF ccsbBroadEn_13039

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001533.1_s300c1, BRDN0000394791
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GALNT13 (114805)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114805 GALNT13 polypeptide N-acetylgalacto... NM_001301627.1 100% 100%
2 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_017003260.2 100% 100%
3 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_011510537.3 98.2% 98.2% 1529_1558del
4 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_017003258.1 98.2% 98.2% 1529_1558del
5 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_017003259.1 98.2% 98.2% 1529_1558del
6 human 114805 GALNT13 polypeptide N-acetylgalacto... NM_052917.4 92.5% 91.7% (many diffs)
7 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_017003261.1 92.5% 91.7% (many diffs)
8 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_017003262.1 67.7% 67.7% 0_1ins543
9 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_011510538.2 66.5% 66.5% 0_1ins543;986_1015del
10 human 114805 GALNT13 polypeptide N-acetylgalacto... XM_024452643.1 61.1% 60% (many diffs)
11 human 114805 GALNT13 polypeptide N-acetylgalacto... XR_001738598.2 25.8% (many diffs)
12 human 114805 GALNT13 polypeptide N-acetylgalacto... XR_001738599.2 25.8% (many diffs)
13 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... NM_173030.2 87.1% 91.4% (many diffs)
14 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XM_006498091.2 87.1% 91.4% (many diffs)
15 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XM_006498092.2 87.1% 91.4% (many diffs)
16 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XM_006498087.3 81.1% 85.1% (many diffs)
17 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XM_006498088.3 81.1% 85.1% (many diffs)
18 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XM_006498089.3 81.1% 85.1% (many diffs)
19 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XM_006498090.3 81.1% 85.1% (many diffs)
20 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XM_006498093.3 60.4% 64.1% (many diffs)
21 mouse 271786 Galnt13 UDP-N-acetyl-alpha-D-galact... XR_374098.3 49.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1752
ORF length:
1683
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGGAGATTT GTCTACTGCA AGGTGGTTCT AGCCACTTCG CTGATGTGGG
121TTCTTGTTGA TGTCTTCTTA CTGCTGTACT TCAGTGAATG TAACAAATGT GATGACAAGA
181AGGAGAGATC TCTGCTGCCT GCATTGAGGG CTGTTATTTC AAGAAACCAA GAAGGGCCAG
241GAGAAATGGG AAAAGCTGTG TTGATTCCTA AAGATGACCA GGAGAAAATG AAAGAGCTGT
301TTAAAATCAA TCAGTTTAAC CTTATGGCCA GTGATTTGAT TGCCCTTAAT AGAAGTCTGC
361CAGATGTAAG ATTAGAAGGA TGTAAGACAA AAGTCTACCC TGATGAACTT CCAAACACAA
421GTGTAGTCAT TGTGTTTCAT AATGAAGCTT GGAGCACTCT CCTTAGAACT GTTTACAGTG
481TGATAAATCG TTCCCCACAC TATCTACTCT CAGAGGTCAT CTTGGTAGAT GATGCCAGTG
541AAAGAGATTT TCTCAAGTTG ACATTAGAGA ATTACGTGAA AAATTTAGAA GTGCCAGTAA
601AAATTATTAG GATGGAAGAA CGCTCTGGGT TAATACGTGC CCGTCTTCGA GGAGCAGCTG
661CTTCAAAAGG GCAGGTCATA ACTTTTCTTG ATGCACACTG TGAATGCACG TTAGGATGGC
721TGGAGCCTTT GCTGGCAAGA ATAAAGGAAG ACAGGAAAAC GGTTGTCTGC CCTATCATTG
781ATGTGATTAG TGATGATACT TTTGAATATA TGGCTGGGTC AGACATGACT TATGGGGGTT
841TTAACTGGAA ACTGAATTTC CGCTGGTATC CTGTTCCCCA AAGAGAAATG GACAGGAGGA
901AAGGAGACAG AACATTACCT GTCAGGACCC CTACTATGGC TGGTGGCCTA TTTTCTATTG
961ACAGAAACTA CTTTGAAGAG ATAGGAACTT ACGATGCAGG AATGGATATC TGGGGTGGAG
1021AGAATCTTGA AATGTCTTTT AGGATTTGGC AATGTGGAGG CTCCTTGGAG ATTGTTACTT
1081GCTCCCATGT TGGTCATGTT TTTCGGAAGG CAACTCCATA CACTTTTCCT GGTGGCACTG
1141GTCATGTCAT CAACAAGAAC AACAGGAGAC TGGCAGAAGT TTGGATGGAT GAATTTAAAG
1201ATTTCTTCTA CATCATATCC CCAGGTGTTG TCAAAGTGGA TTATGGAGAT GTGTCAGTCA
1261GAAAAACACT AAGAGAAAAT CTGAAGTGTA AGCCCTTTTC TTGGTACCTA GAAAACATCT
1321ATCCGGACTC CCAGATCCCA AGACGTTATT ACTCACTTGG TGAGATAAGA AATGTTGAAA
1381CCAATCAGTG TTTAGACAAC ATGGGCCGCA AGGAAAATGA AAAAGTGGGT ATATTCAACT
1441GTCATGGTAT GGGAGGAAAT CAGGTATTTT CTTACACTGC TGACAAAGAA ATCCGAACCG
1501ATGACTTGTG CTTGGATGTT TCTAGACTCA ATGGACCTGT AATCATGTTA AAATGCCACC
1561ATATGAGAGG AAATCAGTTA TGGGAATATG ATGCTGAGTC TTGTCTCTCA GTGAACAAAG
1621TAGCTGATGG CTCCCAGCAT CCTACTGTGG AAACCTGTAA TGATAGCACT TTGCAAAAAT
1681GGCTACTAAG AAACTATACA AGAATGGAAA TTTTTAGAAA TATTTTTGGG AATTCTACTG
1741ATTACATTCT CTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1801caatttgttg caacgaac

Download FASTA (ORF) (Full)

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