Construct: ORF ccsbBroadEn_14883
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004732.1_s300c1, BRDN0000456478
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF141 (7700)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_003441.4 | 99.8% | 99.5% | 897C>N;1353C>N |
| 2 | human | 7700 | ZNF141 | zinc finger protein 141 | XM_017008591.2 | 88.6% | 88.2% | (many diffs) |
| 3 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348277.2 | 83.8% | 83.5% | 0_1ins228;669C>N;1125C>N |
| 4 | human | 7700 | ZNF141 | zinc finger protein 141 | XM_011513562.3 | 82.6% | 82.2% | (many diffs) |
| 5 | human | 654254 | ZNF732 | zinc finger protein 732 | NM_001137608.3 | 71.2% | 62% | (many diffs) |
| 6 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_182524.4 | 63.7% | 54% | (many diffs) |
| 7 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_001286052.1 | 59.3% | 50.5% | (many diffs) |
| 8 | human | 152687 | ZNF595 | zinc finger protein 595 | XM_011513398.2 | 59% | 49.4% | (many diffs) |
| 9 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348278.2 | 41.6% | 40.3% | (many diffs) |
| 10 | human | 170960 | ZNF721 | zinc finger protein 721 | NM_133474.4 | 35.9% | 30.2% | (many diffs) |
| 11 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348280.2 | 18.2% | 16.8% | (many diffs) |
| 12 | human | 107986244 | LOC107986244 | zinc finger protein 141-like | XM_017008889.1 | 14.4% | 12.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1491
- ORF length:
- 1422
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAACTCTTA ACATTCAGGG ATGTGGCCAT AGAATTCTCT CCAGAAGAGT 121 GGAAATGCCT GGACCCTGAC CAGCAGAATT TGTATAGAGA TGTGATGTTG GAGAACTACA 181 GGAACCTGGT CTCCCTGGGT GTTGCTATCT CTAACCCAGA CCTGGTCACC TGTCTGGAGC 241 AAAGAAAAGA GCCCTACAAT GTGAAGATAC ATAAGATCGT AGCCAGACCC CCAGCTATGT 301 GTTCTCATTT CACCCAAGAC CATTGGCCAG TGCAGGGCAT AGAAGATTCA TTCCACAAAC 361 TTATACTGAG AAGATATGAG AAATGTGGAC ATGATAATTT ACAATTAAGA AAAGGCTGTA 421 AAAGTTTGAA TGAGTGTAAG TTGCAGAAAG GAGGTTATAA TGAATTTAAT GAATGCTTGT 481 CAACTACCCA GAGCAAAATA CTTCAGTGTA AAGCAAGTGT CAAAGTTGTT AGTAAATTTT 541 CAAATTCAAA CAAACGTAAG ACAAGACATA CTGGAGAGAA ACACTTTAAA GAATGTGGCA 601 AATCATTTCA GAAGTTTTCA CACCTAACTC AACATAAGGT AATTCATGCT GGAGAGAAAC 661 CCTACACTTG TGAAGAATGT GGCAAAGCCT TTAAATGGTC TTTAATATTT AATGAACATA 721 AGAGAATTCA TACTGGAGAG AAACCTTTTA CTTGTGAAGA ATGTGGCAGC ATCTTTACCA 781 CATCCTCACA CTTTGCTAAG CATAAAATAA TTCATACTGG AGAAAAACCC TATAAATGTG 841 AAGAATGTGG CAAAGCCTTT AATAGGTTCA CAACCCTTAC TAAACATAAG AGAATTCATG 901 CTGGAGAGAA ACCCATCACA TGTGAAGAAT GTAGGAAAAT CTTTACCTCA TCCTCAAACT 961 TTGCNAAACA TAAGCGAATT CATACTGGAG AGAAACCCTA CAAATGTGAA GAATGTGGCA 1021 AAGCCTTTAA TAGGTCCACA ACCCTTACTA AACATAAGAG AATTCATACT GGAGAGAAAC 1081 CCTACACATG TGAAGAATGT GGCAAAGCTT TTAGACAGTC CTCAAAACTG AATGAACATA 1141 AGAAAGTTCA TACTGGAGAG CGGCCCTACA AATGTGATGA ATGTGGCAAA GCCTTTGGAC 1201 GGTCCAGGGT CCTGAATGAA CATaaaaaaa ttcatactgg agagaaaccc tacaaatgtg 1261 aagaatgtgg caaagccttt agacggtcca cagatCGGAG TCAACATAAG AAAATTCATA 1321 GTGCAGATAA ACCCTACAAA TGTAAAGAAT GTGACAAAGc ctttaaacaa tttTCGCTCC 1381 TGAGTCAACA TAAGAAAATT CATACTGTAG ATAAACCCTA NAAATGTAAA GATTGTGACA 1441 AAGCCTTTAA ACGGTTCTCA CACCTGAATA AACATAAGAA AATTCATACT TTGCCAACTT 1501 TCTTGTACAA AGTTGGcatt ataagaaagc attgcttatc aatttgttgc aacgaac