Construct: ORF ccsbBroadEn_16026

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005004.1_s300c1, BRDN0000397367
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC10A7 (84068)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84068 SLC10A7 solute carrier family 10 me... NM_032128.4 100% 100%
2 human 84068 SLC10A7 solute carrier family 10 me... XM_017008690.2 90.8% 85.4% (many diffs)
3 human 84068 SLC10A7 solute carrier family 10 me... XM_017008691.2 87.3% 84.6% (many diffs)
4 human 84068 SLC10A7 solute carrier family 10 me... XM_017008689.1 77.5% 67.5% (many diffs)
5 human 84068 SLC10A7 solute carrier family 10 me... NM_001317817.1 53.4% 42.1% 182_183ins137;255_256ins85
6 human 84068 SLC10A7 solute carrier family 10 me... XM_017008692.1 53.4% 42.1% 182_183ins137;255_256ins85
7 human 84068 SLC10A7 solute carrier family 10 me... NM_001317816.2 45.7% 42.5% (many diffs)
8 human 84068 SLC10A7 solute carrier family 10 me... NM_001029998.6 44.9% 43.8% (many diffs)
9 human 84068 SLC10A7 solute carrier family 10 me... XM_011532311.2 43.3% 40.2% (many diffs)
10 human 84068 SLC10A7 solute carrier family 10 me... NM_001300842.3 42.6% 41.6% (many diffs)
11 human 84068 SLC10A7 solute carrier family 10 me... NM_001317818.2 39.2% 39.6% 184_186delCTTinsGAG;189T>G;192_192delTins286
12 human 84068 SLC10A7 solute carrier family 10 me... XR_001741333.1 26.4% (many diffs)
13 human 84068 SLC10A7 solute carrier family 10 me... NR_133924.2 13% (many diffs)
14 human 84068 SLC10A7 solute carrier family 10 me... XR_001741332.2 12.8% (many diffs)
15 human 84068 SLC10A7 solute carrier family 10 me... XR_938780.3 12.4% (many diffs)
16 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_017313009.1 81.3% 80.3% (many diffs)
17 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_006531491.2 79.8% 81% (many diffs)
18 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_006531489.1 60% 61.3% (many diffs)
19 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_011248545.1 58.2% 59.4% (many diffs)
20 mouse 76775 Slc10a7 solute carrier family 10 (s... XM_017313010.1 47.1% 38.3% (many diffs)
21 mouse 76775 Slc10a7 solute carrier family 10 (s... NM_001282108.1 45.9% 46.3% (many diffs)
22 mouse 76775 Slc10a7 solute carrier family 10 (s... NM_001009981.2 42.4% 44.2% (many diffs)
23 mouse 76775 Slc10a7 solute carrier family 10 (s... NM_029736.2 40.3% 40.6% (many diffs)
24 mouse 76775 Slc10a7 solute carrier family 10 (s... XR_387783.1 12.5% (many diffs)
25 mouse 76775 Slc10a7 solute carrier family 10 (s... XR_387784.1 11.5% (many diffs)
26 mouse 76775 Slc10a7 solute carrier family 10 (s... XR_387785.1 11.1% (many diffs)
27 mouse 76775 Slc10a7 solute carrier family 10 (s... XR_878921.1 11.1% (many diffs)
28 mouse 76775 Slc10a7 solute carrier family 10 (s... NR_104094.1 9.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
543
ORF length:
477
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgag gctgctggag agaatgagga aagactggtt catggtcgga atagtgctgg
121cgatcgctgg agctaaactg gagccgtcca taggggtgaa tgggggacca ctgaagccag
181aaataactgt atcctacatt gctgttgcaa caatattctt taacagtgga ctatcattga
241aaacagagga gctgaccagt gctttggtgc atctaaaact gcatcttttt attcagatct
301ttactcttgc attcttccca gcaacaatat ggctttttct tcagctttta tcaatcacac
361ccatcaacga atggctttta aaaggtttgc agacagtagg ttgcatgcct ccgcctgtgt
421cttctgcagt gattttaacc aaggcagttg gtggaaatga ggcagctgca atatttaatt
481cagcctttgg aagttttttg gtaagtaaac atagtttaac ttgtctatta caacttttgc
541tgtnnccaac tttcttgtac aaagttggca ttataagaaa gcattgctta tcaatttgtt
601gcaacgaac

Download FASTA (ORF) (Full)