Construct: ORF ccsbBroadEn_16172
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014019.1_s300c1, BRDN0000391504
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368080.1 | 65.8% | 65.8% | 360_800del |
| 2 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449812.1 | 65.8% | 65.8% | 360_800del |
| 3 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449813.1 | 65.8% | 65.8% | 360_800del |
| 4 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001368078.1 | 65.2% | 65.2% | 360_812del |
| 5 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449810.1 | 62.7% | 62.7% | 360_863del |
| 6 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449811.1 | 62.7% | 62.7% | 360_863del |
| 7 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449906.1 | 62.7% | 62.7% | 360_863del |
| 8 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449907.1 | 62.7% | 62.7% | 360_863del |
| 9 | human | 653061 | GOLGA8S | golgin A8 family member S | NM_001355465.1 | 59.2% | 54.4% | (many diffs) |
| 10 | human | 653061 | GOLGA8S | golgin A8 family member S | XM_024450030.1 | 59.2% | 54.4% | (many diffs) |
| 11 | human | 23015 | GOLGA8A | golgin A8 family member A | XM_017022020.2 | 55.6% | 50.5% | (many diffs) |
| 12 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521951.3 | 52.1% | 47.2% | (many diffs) |
| 13 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_011521954.3 | 52.1% | 47.2% | (many diffs) |
| 14 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450037.1 | 52.1% | 47.2% | (many diffs) |
| 15 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450034.1 | 51.7% | 46% | (many diffs) |
| 16 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450035.1 | 51.7% | 46% | (many diffs) |
| 17 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_024450042.1 | 51% | 44.7% | (many diffs) |
| 18 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_024450036.1 | 45.5% | 41.2% | (many diffs) |
| 19 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450033.1 | 45.1% | 40.2% | (many diffs) |
| 20 | human | 283768 | GOLGA8G | golgin A8 family member G | NM_001350919.2 | 43.6% | 43.6% | 1_654del;1014_1454del |
| 21 | human | 100132565 | GOLGA8F | golgin A8 family member F | NM_001350920.1 | 43.6% | 43.6% | 1_654del;1014_1454del |
| 22 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368071.2 | 42.4% | 38.5% | (many diffs) |
| 23 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_001368072.1 | 42.4% | 38.5% | (many diffs) |
| 24 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449809.1 | 42.3% | 42.3% | 1_651del;1011_1514del |
| 25 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449905.1 | 42.3% | 42.3% | 1_651del;1011_1514del |
| 26 | human | 23015 | GOLGA8A | golgin A8 family member A | NM_181077.4 | 42.3% | 38.4% | (many diffs) |
| 27 | human | 100132565 | GOLGA8F | golgin A8 family member F | XM_024449808.1 | 42.3% | 42.3% | 1_654del;1014_1517del |
| 28 | human | 283768 | GOLGA8G | golgin A8 family member G | XM_024449904.1 | 42.3% | 42.3% | 1_654del;1014_1517del |
| 29 | human | 440270 | GOLGA8B | golgin A8 family member B | NM_001023567.5 | 42.2% | 38.3% | (many diffs) |
| 30 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_006720654.3 | 40.6% | 36.7% | (many diffs) |
| 31 | human | 728047 | GOLGA8O | golgin A8 family member O | XM_011521988.3 | 40.4% | 35.3% | (many diffs) |
| 32 | human | 653073 | GOLGA8J | golgin A8 family member J | XM_006720651.3 | 40.3% | 36.1% | (many diffs) |
| 33 | human | 653075 | GOLGA8T | golgin A8 family member T | XM_024450032.1 | 40.2% | 35.8% | (many diffs) |
| 34 | human | 653720 | GOLGA8M | golgin A8 family member M | NM_001282468.1 | 39.8% | 36% | (many diffs) |
| 35 | human | 653073 | GOLGA8J | golgin A8 family member J | NM_001282472.1 | 39.5% | 35.3% | (many diffs) |
| 36 | human | 728498 | GOLGA8H | golgin A8 family member H | NM_001282490.1 | 39.5% | 35.3% | (many diffs) |
| 37 | human | 653125 | GOLGA8K | golgin A8 family member K | NM_001282493.1 | 39.4% | 35.3% | (many diffs) |
| 38 | human | 653075 | GOLGA8T | golgin A8 family member T | NM_001355469.1 | 39.4% | 35.1% | (many diffs) |
| 39 | human | 728047 | GOLGA8O | golgin A8 family member O | NM_001277308.1 | 38.9% | 34.1% | (many diffs) |
| 40 | human | 643699 | GOLGA8N | golgin A8 family member N | NM_001282494.1 | 38.9% | 34.1% | (many diffs) |
| 41 | human | 727909 | GOLGA8Q | golgin A8 family member Q | NM_001355476.1 | 38.9% | 33.9% | (many diffs) |
| 42 | human | 101059918 | GOLGA8R | golgin A8 family member R | NM_001282484.1 | 38.7% | 33.6% | (many diffs) |
| 43 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268285.5 | 38.1% | 34.7% | (many diffs) |
| 44 | human | 653720 | GOLGA8M | golgin A8 family member M | XM_005268284.5 | 37.1% | 33.5% | (many diffs) |
| 45 | human | 100132565 | GOLGA8F | golgin A8 family member F | XR_002957623.1 | 26.4% | 1_716del;1076_1424del;1571_1572ins343 | |
| 46 | human | 283768 | GOLGA8G | golgin A8 family member G | XR_002957634.1 | 26.4% | 1_716del;1076_1424del;1571_1572ins343 | |
| 47 | human | 100132565 | GOLGA8F | golgin A8 family member F | NR_033351.1 | 18.8% | 1_1015del;1375_1815del;2306_4511del | |
| 48 | human | 390535 | GOLGA8EP | golgin A8 family member E, ... | NR_033350.1 | 16% | (many diffs) | |
| 49 | human | 729786 | GOLGA8CP | golgin A8 family member C, ... | NR_027411.2 | 15.9% | (many diffs) | |
| 50 | human | 100132979 | GOLGA8DP | golgin A8 family member D, ... | NR_027407.1 | 15.8% | (many diffs) | |
| 51 | human | 440270 | GOLGA8B | golgin A8 family member B | NR_027410.1 | 11.7% | (many diffs) | |
| 52 | human | 23015 | GOLGA8A | golgin A8 family member A | NR_027409.2 | 11.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 918
- ORF length:
- 849
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggagtggaag ttagagcagt ccatgcggga gcaggcactg ctgaaagcgc 121 agctgacaca gttgaaggag tcacttaaag aagtccagct agagagggat gaatatgctg 181 aacatctaaa aggagagagg gcccggtggc agcagaggat gagaaaaatg tcgcaggagg 241 tttgctcgtt gaagaaggag aagaagcatg ataaatatcg ggtagagaag ctggagagga 301 gcttgtccaa actcaaacac cagatggctg aacctctgcc cccggagccc ccagcagtgc 361 cctctgaggt ggagctgcag cacctgagga aggaactaga gagagtggca ggagagctcc 421 aggcccaggt ggagaaagaa gaacttggat tcttccagta ctacagagag agatgccatc 481 agaaagttta tcaccctata acaaagccag ggggcagtgc caaagatgca gcaccgggag 541 gaggacacca tcaggctggc cctggacagg gaggagatga aggtgaagct gctggagctg 601 caggagatgg tgttgcagct ggtggcgact acaagggaca cagcaaattc ttggtgactg 661 cccagaaccc tgctcatgag cccagtccag gagccccagc cccccaggag cttggggctg 721 cccacaagca tggtgatctt tgtgaggtga gcctcactga cagcgtggag cctgtgcaag 781 gagaggccag ggagggttct ccccacgaca accctactgc acagccgatc gtgcaggacc 841 accaggagca cccaggcttg ggcagcaact gctgtgtgcc attcttttgc tgggcttggc 901 tgccaagaag aaggagatnn ccaactttct tgtacaaagt tggcattata agaaagcatt 961 gcttatcaat ttgttgcaac gaac