Transcript: Human NM_001289953.1

Homo sapiens zinc finger protein 761 (ZNF761), transcript variant 4, mRNA.

Source:
NCBI, updated 2018-06-30
Taxon:
Homo sapiens (human)
Gene:
ZNF761 (388561)
Length:
813
CDS:
185..397

Additional Resources:

NCBI RefSeq record:
NM_001289953.1
NBCI Gene record:
ZNF761 (388561)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001289953.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000021905 GACGTGATGCTGGAGAATTAT pLKO.1 287 CDS 100% 15.000 7.500 Y ZNF765 n/a
2 TRCN0000021906 CCCTGCTCAGAGGACTCTATA pLKO.1 262 CDS 100% 13.200 6.600 Y ZNF765 n/a
3 TRCN0000021908 TCAGGGATGTGGCCATAGAAT pLKO.1 213 CDS 100% 5.625 2.813 Y ZNF765 n/a
4 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 486 3UTR 100% 4.950 2.475 Y ERAP2 n/a
5 TRCN0000021904 GACTCTATACAGGGACGTGAT pLKO.1 274 CDS 100% 4.050 2.025 Y ZNF765 n/a
6 TRCN0000021907 GCTGGAGAATTATAGGAACCT pLKO.1 295 CDS 100% 2.640 1.320 Y ZNF765 n/a
7 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 487 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001289953.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14339 pDONR223 100% 73.6% 2.8% None (many diffs) n/a
2 ccsbBroad304_14339 pLX_304 0% 73.6% 2.8% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000478280 ACGAGTTCACTGTCATGACCAACC pLX_317 100% 73.6% 2.8% V5 (not translated due to prior stop codon) (many diffs) n/a
4 ccsbBroadEn_08581 pDONR223 100% 12.4% 10.4% None (many diffs) n/a
5 ccsbBroad304_08581 pLX_304 0% 12.4% 10.4% V5 (many diffs) n/a
6 TRCN0000476486 AGTATTTAAATCGATGTCTATAAC pLX_317 30.4% 12.4% 10.4% V5 (many diffs) n/a
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