Construct: ORF ccsbBroadEn_14339
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003079.1_s300c1, BRDN0000393433
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ZNF765 (91661)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289953.1 | 73.6% | 2.8% | (many diffs) |
| 2 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369768.1 | 71.1% | 4% | (many diffs) |
| 3 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451399.1 | 57.8% | 3.2% | (many diffs) |
| 4 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369766.1 | 49.1% | 2.6% | (many diffs) |
| 5 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351777.1 | 45.6% | 2.5% | (many diffs) |
| 6 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451398.1 | 45.6% | 2.5% | (many diffs) |
| 7 | human | 90333 | ZNF468 | zinc finger protein 468 | NM_001277120.2 | 45.1% | 2.3% | (many diffs) |
| 8 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369761.1 | 43.8% | 2.3% | (many diffs) |
| 9 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451396.1 | 20.9% | 1.1% | (many diffs) |
| 10 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451397.1 | 20.9% | 1.1% | (many diffs) |
| 11 | human | 388561 | ZNF761 | zinc finger protein 761 | NR_110551.2 | 16.7% | (many diffs) | |
| 12 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 12.3% | .8% | (many diffs) |
| 13 | human | 170958 | ZNF525 | zinc finger protein 525 | NM_001348156.2 | 11.8% | .6% | (many diffs) |
| 14 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351773.1 | 11.2% | .5% | (many diffs) |
| 15 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351774.2 | 11.2% | .5% | (many diffs) |
| 16 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351775.2 | 11.2% | .5% | (many diffs) |
| 17 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351776.2 | 11.2% | .5% | (many diffs) |
| 18 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_207333.3 | 11.2% | .5% | (many diffs) |
| 19 | human | 90333 | ZNF468 | zinc finger protein 468 | NM_001008801.2 | 10.9% | .3% | (many diffs) |
| 20 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 10.7% | .7% | (many diffs) |
| 21 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 10.7% | .7% | (many diffs) |
| 22 | human | 91661 | ZNF765 | zinc finger protein 765 | NM_001040185.3 | 10.7% | .5% | (many diffs) |
| 23 | human | 90333 | ZNF468 | zinc finger protein 468 | XM_017027443.1 | 10% | .3% | (many diffs) |
| 24 | human | 126017 | ZNF813 | zinc finger protein 813 | NM_001004301.4 | 9.1% | .4% | (many diffs) |
| 25 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145447.2 | 8.6% | (many diffs) | |
| 26 | human | 91661 | ZNF765 | zinc finger protein 765 | NR_146721.1 | 8.5% | (many diffs) | |
| 27 | human | 388559 | ZNF888 | zinc finger protein 888 | NM_001310127.1 | 7.9% | .4% | (many diffs) |
| 28 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_005259451.5 | 7.9% | .4% | (many diffs) |
| 29 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026799.2 | 7.9% | .4% | (many diffs) |
| 30 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369764.1 | 7.7% | .2% | (many diffs) |
| 31 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145446.2 | 7.6% | (many diffs) | |
| 32 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001008401.4 | 7.5% | .4% | (many diffs) |
| 33 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289951.2 | 7.5% | .4% | (many diffs) |
| 34 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289952.1 | 7.5% | .4% | (many diffs) |
| 35 | human | 110116772 | ZNF765-ZNF761 | ZNF765-ZNF761 readthrough | NM_001350496.2 | 7.5% | .4% | (many diffs) |
| 36 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_006723267.1 | 7.4% | .3% | (many diffs) |
| 37 | human | 79788 | ZNF665 | zinc finger protein 665 | NM_001353459.2 | 7.4% | .4% | (many diffs) |
| 38 | human | 79788 | ZNF665 | zinc finger protein 665 | NM_024733.5 | 7.4% | .4% | (many diffs) |
| 39 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_006969.5 | 7.4% | .2% | (many diffs) |
| 40 | human | 7576 | ZNF28 | zinc finger protein 28 | XM_011527262.2 | 7.4% | .2% | (many diffs) |
| 41 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027362.1 | 7.1% | .4% | (many diffs) |
| 42 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027363.2 | 7.1% | .4% | (many diffs) |
| 43 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027364.1 | 7.1% | .4% | (many diffs) |
| 44 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958279.1 | 7% | (many diffs) | |
| 45 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958278.1 | 6.9% | (many diffs) | |
| 46 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026798.2 | 6.9% | .2% | (many diffs) |
| 47 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958277.1 | 6.9% | (many diffs) | |
| 48 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958275.1 | 6.6% | (many diffs) | |
| 49 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958276.1 | 6.6% | (many diffs) | |
| 50 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027360.1 | 6.3% | .4% | (many diffs) |
| 51 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027361.1 | 6.3% | .4% | (many diffs) |
| 52 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_001753616.2 | 6.3% | (many diffs) | |
| 53 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 5.7% | (many diffs) | |
| 54 | human | 84671 | ZNF347 | zinc finger protein 347 | NM_001172674.1 | 5.7% | .3% | (many diffs) |
| 55 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321522.1 | 5.7% | .2% | (many diffs) |
| 56 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321523.1 | 5.7% | .2% | (many diffs) |
| 57 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321524.1 | 5.7% | .2% | (many diffs) |
| 58 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_138374.3 | 5.7% | .2% | (many diffs) |
| 59 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 4.8% | (many diffs) | |
| 60 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 4.8% | (many diffs) | |
| 61 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 4.5% | (many diffs) | |
| 62 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 3.6% | (many diffs) | |
| 63 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 3.5% | (many diffs) | |
| 64 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 3.5% | (many diffs) | |
| 65 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 3.4% | (many diffs) | |
| 66 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145445.2 | 3.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 87
- ORF length:
- 21
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCTCCTCAGG GTCTATTGAC ATTCAGGGAT GTGGCCATAG AATTCTCTCA 121 GGAGGAGTGG AAATGCCTGG ACCCTGCTCA GAGGACTCTA TACAGGGACG TGATGCTGGA 181 GAATTATAGG AACCTGGTCT CCCTGGAGTT GTCAGGGGAG TGTCCATTGA CAGCACCTGC 241 CTCCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct tatcaatttg 301 ttgcaacgaa c