Construct: ORF TRCN0000478280
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003079.2_s317c1
- Derived from:
- ccsbBroadEn_14339
- DNA Barcode:
- ACGAGTTCACTGTCATGACCAACC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ZNF765 (91661)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478280
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289953.1 | 73.6% | 2.8% | (many diffs) |
| 2 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369768.1 | 71.1% | 4% | (many diffs) |
| 3 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451399.1 | 57.8% | 3.2% | (many diffs) |
| 4 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369766.1 | 49.1% | 2.6% | (many diffs) |
| 5 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351777.1 | 45.6% | 2.5% | (many diffs) |
| 6 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451398.1 | 45.6% | 2.5% | (many diffs) |
| 7 | human | 90333 | ZNF468 | zinc finger protein 468 | NM_001277120.2 | 45.1% | 2.3% | (many diffs) |
| 8 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369761.1 | 43.8% | 2.3% | (many diffs) |
| 9 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451396.1 | 20.9% | 1.1% | (many diffs) |
| 10 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451397.1 | 20.9% | 1.1% | (many diffs) |
| 11 | human | 388561 | ZNF761 | zinc finger protein 761 | NR_110551.2 | 16.7% | (many diffs) | |
| 12 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 12.3% | .8% | (many diffs) |
| 13 | human | 170958 | ZNF525 | zinc finger protein 525 | NM_001348156.2 | 11.8% | .6% | (many diffs) |
| 14 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351773.1 | 11.2% | .5% | (many diffs) |
| 15 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351774.2 | 11.2% | .5% | (many diffs) |
| 16 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351775.2 | 11.2% | .5% | (many diffs) |
| 17 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351776.2 | 11.2% | .5% | (many diffs) |
| 18 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_207333.3 | 11.2% | .5% | (many diffs) |
| 19 | human | 90333 | ZNF468 | zinc finger protein 468 | NM_001008801.2 | 10.9% | .3% | (many diffs) |
| 20 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 10.7% | .7% | (many diffs) |
| 21 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 10.7% | .7% | (many diffs) |
| 22 | human | 91661 | ZNF765 | zinc finger protein 765 | NM_001040185.3 | 10.7% | .5% | (many diffs) |
| 23 | human | 90333 | ZNF468 | zinc finger protein 468 | XM_017027443.1 | 10% | .3% | (many diffs) |
| 24 | human | 126017 | ZNF813 | zinc finger protein 813 | NM_001004301.4 | 9.1% | .4% | (many diffs) |
| 25 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145447.2 | 8.6% | (many diffs) | |
| 26 | human | 91661 | ZNF765 | zinc finger protein 765 | NR_146721.1 | 8.5% | (many diffs) | |
| 27 | human | 388559 | ZNF888 | zinc finger protein 888 | NM_001310127.1 | 7.9% | .4% | (many diffs) |
| 28 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_005259451.5 | 7.9% | .4% | (many diffs) |
| 29 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026799.2 | 7.9% | .4% | (many diffs) |
| 30 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369764.1 | 7.7% | .2% | (many diffs) |
| 31 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145446.2 | 7.6% | (many diffs) | |
| 32 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001008401.4 | 7.5% | .4% | (many diffs) |
| 33 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289951.2 | 7.5% | .4% | (many diffs) |
| 34 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289952.1 | 7.5% | .4% | (many diffs) |
| 35 | human | 110116772 | ZNF765-ZNF761 | ZNF765-ZNF761 readthrough | NM_001350496.2 | 7.5% | .4% | (many diffs) |
| 36 | human | 55786 | ZNF415 | zinc finger protein 415 | XM_006723267.1 | 7.4% | .3% | (many diffs) |
| 37 | human | 79788 | ZNF665 | zinc finger protein 665 | NM_001353459.2 | 7.4% | .4% | (many diffs) |
| 38 | human | 79788 | ZNF665 | zinc finger protein 665 | NM_024733.5 | 7.4% | .4% | (many diffs) |
| 39 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_006969.5 | 7.4% | .2% | (many diffs) |
| 40 | human | 7576 | ZNF28 | zinc finger protein 28 | XM_011527262.2 | 7.4% | .2% | (many diffs) |
| 41 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027362.1 | 7.1% | .4% | (many diffs) |
| 42 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027363.2 | 7.1% | .4% | (many diffs) |
| 43 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027364.1 | 7.1% | .4% | (many diffs) |
| 44 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958279.1 | 7% | (many diffs) | |
| 45 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958278.1 | 6.9% | (many diffs) | |
| 46 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026798.2 | 6.9% | .2% | (many diffs) |
| 47 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958277.1 | 6.9% | (many diffs) | |
| 48 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958275.1 | 6.6% | (many diffs) | |
| 49 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958276.1 | 6.6% | (many diffs) | |
| 50 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027360.1 | 6.3% | .4% | (many diffs) |
| 51 | human | 84436 | ZNF528 | zinc finger protein 528 | XM_017027361.1 | 6.3% | .4% | (many diffs) |
| 52 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_001753616.2 | 6.3% | (many diffs) | |
| 53 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 5.7% | (many diffs) | |
| 54 | human | 84671 | ZNF347 | zinc finger protein 347 | NM_001172674.1 | 5.7% | .3% | (many diffs) |
| 55 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321522.1 | 5.7% | .2% | (many diffs) |
| 56 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321523.1 | 5.7% | .2% | (many diffs) |
| 57 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321524.1 | 5.7% | .2% | (many diffs) |
| 58 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_138374.3 | 5.7% | .2% | (many diffs) |
| 59 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 4.8% | (many diffs) | |
| 60 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 4.8% | (many diffs) | |
| 61 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 4.5% | (many diffs) | |
| 62 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 3.6% | (many diffs) | |
| 63 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 3.5% | (many diffs) | |
| 64 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 3.5% | (many diffs) | |
| 65 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 3.4% | (many diffs) | |
| 66 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145445.2 | 3.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 111
- ORF length:
- 21
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGCTCTCCT CAGGGTCTAT TGACATTCAG 121 GGATGTGGCC ATAGAATTCT CTCAGGAGGA GTGGAAATGC CTGGACCCTG CTCAGAGGAC 181 TCTATACAGG GACGTGATGC TGGAGAATTA TAGGAACCTG GTCTCCCTGG AGTTGTCAGG 241 GGAGTGTCCA TTGACAGCAC CTGCCTCCTG CCCAACTTTC TTGTACAAAG TGGTTGATAT 301 CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC 361 GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAACGAGT 421 TCACTGTCAT GACCAACCAC GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt 481 gaaagatt