Transcript: Human NR_136513.2

Homo sapiens zinc finger and SCAN domain containing 12 (ZSCAN12), transcript variant 9, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
ZSCAN12 (9753)
Length:
2561
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_136513.2
NBCI Gene record:
ZSCAN12 (9753)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_136513.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013503 CCTGGATGATTATCTCTGTTT pLKO.1 1422 3UTR 100% 4.950 3.465 N ZSCAN12 n/a
2 TRCN0000139610 CGAACTCCTGACCTTGTGATA pLKO.1 1984 3UTR 100% 4.950 2.475 Y RBM48 n/a
3 TRCN0000130146 CAGGTTCAAGTGATTCTCCTA pLKO.1 1857 3UTR 100% 2.640 1.320 Y DICER1-AS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_136513.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13781 pDONR223 100% 9.4% None (many diffs) n/a
2 ccsbBroad304_13781 pLX_304 0% 9.4% V5 (many diffs) n/a
3 TRCN0000469746 TCCCTGCGCCGTCCGGGTTTTCGA pLX_317 100% 9.4% V5 (many diffs) n/a
4 ccsbBroadEn_12783 pDONR223 100% 7.5% None (many diffs) n/a
5 ccsbBroad304_12783 pLX_304 0% 7.5% V5 (many diffs) n/a
6 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 7.5% V5 (many diffs) n/a
7 ccsbBroadEn_15487 pDONR223 0% 6.2% None (many diffs) n/a
8 ccsbBroad304_15487 pLX_304 0% 6.2% V5 (many diffs) n/a
9 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% 6.2% V5 (many diffs) n/a
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