Transcript: Human XM_017011376.2

PREDICTED: Homo sapiens reticulon 4 interacting protein 1 (RTN4IP1), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RTN4IP1 (84816)
Length:
1438
CDS:
411..1277

Additional Resources:

NCBI RefSeq record:
XM_017011376.2
NBCI Gene record:
RTN4IP1 (84816)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017011376.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219631 CCTATCATACACTATCCAAAT pLKO.1 606 CDS 100% 10.800 15.120 N Rtn4ip1 n/a
2 TRCN0000157614 GTCCATTATCGCTGGGCATTT pLKO.1 1232 CDS 100% 10.800 15.120 N RTN4IP1 n/a
3 TRCN0000153906 CAAGGCACTCTTTCAGAGTTT pLKO.1 864 CDS 100% 4.950 3.960 N RTN4IP1 n/a
4 TRCN0000153879 CGTGATCCTTTACACGTGAAA pLKO.1 717 CDS 100% 4.950 3.960 N RTN4IP1 n/a
5 TRCN0000153224 GCTGCCAGTGTAAATCCTATA pLKO.1 648 CDS 100% 10.800 7.560 N RTN4IP1 n/a
6 TRCN0000151630 GAAGAATGAAGTGCTTCGATT pLKO.1 566 CDS 100% 4.950 3.465 N RTN4IP1 n/a
7 TRCN0000153419 GCTTCGATTCACTCAGAACAT pLKO.1 578 CDS 100% 4.950 3.465 N RTN4IP1 n/a
8 TRCN0000152484 CAGGTAATGAAAGCATGGGAT pLKO.1 1077 CDS 100% 2.640 1.848 N RTN4IP1 n/a
9 TRCN0000157615 GACATTGCAGAACTGGTGGAT pLKO.1 1280 3UTR 100% 2.640 1.848 N RTN4IP1 n/a
10 TRCN0000152895 GTGTTCTAATCTTAGGCGCTT pLKO.1 1030 CDS 100% 2.160 1.512 N RTN4IP1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017011376.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12859 pDONR223 100% 62.1% 58.5% None 1_126del;806_807ins184;864_865ins140 n/a
2 ccsbBroad304_12859 pLX_304 0% 62.1% 58.5% V5 1_126del;806_807ins184;864_865ins140 n/a
3 TRCN0000472523 CGATTTAGGCAGATTCCTTAACCA pLX_317 35.9% 62.1% 58.5% V5 1_126del;806_807ins184;864_865ins140 n/a
Download CSV