Transcript: Human XM_017026186.1

PREDICTED: Homo sapiens leukocyte immunoglobulin like receptor B1 (LILRB1), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LILRB1 (10859)
Length:
2832
CDS:
175..2184

Additional Resources:

NCBI RefSeq record:
XM_017026186.1
NBCI Gene record:
LILRB1 (10859)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017026186.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000073414 GCTGTTACTATGGTAGCGACA pLKO.1 515 CDS 100% 2.160 3.024 N LILRB1 n/a
2 TRCN0000222550 GCTGGCTACAACAGATTTGTT pLKO.1 973 CDS 100% 5.625 3.938 N LILRB1 n/a
3 TRCN0000073416 GACAGTTCTATGACAGAGTCT pLKO.1 1184 CDS 100% 2.640 1.848 N LILRB1 n/a
4 TRCN0000073415 GTCTAAGATCAACGTACCAAT pLKO.1 1328 CDS 100% 4.950 2.970 N LILRB1 n/a
5 TRCN0000372843 CACTCAATTCTGCAGTATAAA pLKO_005 2313 3UTR 100% 15.000 7.500 Y LILRB1 n/a
6 TRCN0000372844 TAAGTCAGAAAGTGCATTAAA pLKO_005 2405 3UTR 100% 15.000 7.500 Y LILRB1 n/a
7 TRCN0000056947 GTGGCATTTGATGGCTTCATT pLKO.1 670 CDS 100% 5.625 2.813 Y LILRA3 n/a
8 TRCN0000073413 CGCCTGTAATTCCAGCACTTT pLKO.1 2571 3UTR 100% 4.950 2.475 Y LILRB1 n/a
9 TRCN0000056874 GAGAAGATGAACACCCACAAT pLKO.1 704 CDS 100% 4.950 2.475 Y LILRA1 n/a
10 TRCN0000372875 GAACTCAGGAGGGAATGTAAT pLKO_005 630 CDS 100% 13.200 9.240 N LILRB1 n/a
11 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 2644 3UTR 100% 4.950 2.475 Y LOC339059 n/a
12 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 2647 3UTR 100% 4.950 2.475 Y ORAI2 n/a
13 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 2735 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017026186.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07695 pDONR223 100% 96.9% 96.8% None (many diffs) n/a
2 ccsbBroad304_07695 pLX_304 0% 96.9% 96.8% V5 (many diffs) n/a
3 TRCN0000477615 ACCTCCGGAGCACCCTCCTCATAA pLX_317 20.9% 96.9% 96.8% V5 (many diffs) n/a
4 ccsbBroadEn_02599 pDONR223 100% 63% 56.7% None (many diffs) n/a
5 ccsbBroad304_02599 pLX_304 0% 63% 56.7% V5 (many diffs) n/a
6 TRCN0000476912 AATATTGCGCGCAACCGAGCATCT pLX_317 19.2% 63% 56.7% V5 (many diffs) n/a
7 ccsbBroadEn_07730 pDONR223 100% 61.6% 53.8% None (many diffs) n/a
8 ccsbBroad304_07730 pLX_304 0% 61.6% 53.8% V5 (many diffs) n/a
9 ccsbBroadEn_07729 pDONR223 100% 59.9% 54.7% None (many diffs) n/a
10 ccsbBroad304_07729 pLX_304 0% 59.9% 54.7% V5 (many diffs) n/a
11 TRCN0000478306 AGCCAAGCTCAGGCTTTGGACACT pLX_317 25.7% 59.9% 54.7% V5 (many diffs) n/a
12 ccsbBroadEn_07723 pDONR223 100% 56.7% 47.3% None (many diffs) n/a
13 ccsbBroad304_07723 pLX_304 0% 56.7% 47.3% V5 (many diffs) n/a
14 TRCN0000478308 ATCGACTTCGATGCCTGGACTCCC pLX_317 25% 56.7% 47.3% V5 (many diffs) n/a
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