Transcript: Human XR_001751322.2

PREDICTED: Homo sapiens INO80 complex ATPase subunit (INO80), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
INO80 (54617)
Length:
5310
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001751322.2
NBCI Gene record:
INO80 (54617)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001751322.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365462 TGTAATCACCCGGAGTTATTT pLKO_005 4295 3UTR 100% 15.000 21.000 N INO80 n/a
2 TRCN0000370589 CATGAGTCGCAAACGAGATAT pLKO_005 3043 3UTR 100% 13.200 18.480 N INO80 n/a
3 TRCN0000370591 CCCTAAAGCCATACCACATTT pLKO_005 4350 3UTR 100% 13.200 18.480 N INO80 n/a
4 TRCN0000365521 GGATGACAGTAATCCATTATT pLKO_005 2014 3UTR 100% 15.000 12.000 N INO80 n/a
5 TRCN0000365460 GGATCCCTTAATACAAGTTAA pLKO_005 2047 3UTR 100% 13.200 10.560 N INO80 n/a
6 TRCN0000107558 CGTAACCTGTTTCTCACCAAT pLKO.1 2747 3UTR 100% 4.950 3.960 N INO80 n/a
7 TRCN0000107556 GCCCAGAAGAACTGTAAGGAA pLKO.1 2822 3UTR 100% 3.000 2.400 N INO80 n/a
8 TRCN0000370590 TCTATATGAACAGGGTATTAA pLKO_005 3442 3UTR 100% 15.000 10.500 N INO80 n/a
9 TRCN0000107557 GCTGCTATATCAGGCACTAAA pLKO.1 4165 3UTR 100% 13.200 9.240 N INO80 n/a
10 TRCN0000107559 CCCTTAATACAAGTTAAGGAA pLKO.1 2051 3UTR 100% 0.300 0.210 N INO80 n/a
11 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 252 3UTR 100% 5.625 2.813 Y KLHL30 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 252 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001751322.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03442 pDONR223 100% 52.7% None (many diffs) n/a
2 ccsbBroad304_03442 pLX_304 0% 52.7% V5 (many diffs) n/a
3 TRCN0000476169 TTCGTGAAGTAGAACACGTTCACA pLX_317 8.5% 52.7% V5 (many diffs) n/a
4 ccsbBroadEn_13766 pDONR223 100% 2.8% None (many diffs) n/a
5 ccsbBroad304_13766 pLX_304 0% 2.8% V5 (many diffs) n/a
6 TRCN0000474083 TCTCGACACAAACAGACTTCAACG pLX_317 100% 2.8% V5 (many diffs) n/a
7 ccsbBroadEn_10261 pDONR223 100% 1.1% None (many diffs) n/a
8 ccsbBroad304_10261 pLX_304 0% 1.1% V5 (many diffs) n/a
9 TRCN0000492083 TTATAGGCCCAGAGCACTACCAAC pLX_317 100% 1.1% V5 (many diffs) n/a
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