Construct: ORF ccsbBroadEn_12773
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018068.1_s300c1, BRDN0000395297
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC10A7 (84068)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008690.2 | 81.8% | 72.8% | (many diffs) |
| 2 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_032128.4 | 81.6% | 79.7% | (many diffs) |
| 3 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008691.2 | 74.1% | 73.1% | (many diffs) |
| 4 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008689.1 | 70.2% | 63.4% | (many diffs) |
| 5 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001029998.6 | 54.7% | 54.4% | 556_562delATTGTCC;566_1020del |
| 6 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001300842.3 | 51.9% | 51.6% | 556_562delATTGTCC;566_1074del |
| 7 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317816.2 | 50.8% | 50.5% | 395_396ins39;517_523delATTGTCC;527_981del |
| 8 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_011532311.2 | 48.3% | 48% | 395_396ins39;517_523delATTGTCC;527_1035del |
| 9 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317817.1 | 45.6% | 36% | 182_183ins137;255_256ins166 |
| 10 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008692.1 | 45.6% | 36% | 182_183ins137;255_256ins166 |
| 11 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_001741333.1 | 34.5% | (many diffs) | |
| 12 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317818.2 | 33.5% | 33.8% | 184_186delCTTinsGAG;189T>G;192_192delTins367 |
| 13 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_011532313.2 | 20.3% | 20.1% | 0_1ins339;217_223delATTGTCC;227_735del |
| 14 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NR_133924.2 | 15.7% | 1_223del;782_3538del | |
| 15 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_001741332.2 | 15.5% | 1_226del;782_788delATTGTCC;792_3600del | |
| 16 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_938780.3 | 15% | 1_226del;782_788delATTGTCC;792_3711del | |
| 17 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_017313009.1 | 75.8% | 72% | (many diffs) |
| 18 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_011248545.1 | 68.6% | 61.1% | (many diffs) |
| 19 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_001282108.1 | 54.4% | 57.7% | (many diffs) |
| 20 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_001009981.2 | 50.8% | 47.4% | (many diffs) |
| 21 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_029736.2 | 47.7% | 50.5% | (many diffs) |
| 22 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_006531488.1 | 44.1% | 46.7% | (many diffs) |
| 23 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_017313010.1 | 40.3% | 32.7% | (many diffs) |
| 24 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_001282109.1 | 18.7% | 16% | (many diffs) |
| 25 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XR_387783.1 | 14.7% | (many diffs) | |
| 26 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XR_387784.1 | 13.6% | (many diffs) | |
| 27 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XR_387785.1 | 13.1% | (many diffs) | |
| 28 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XR_878921.1 | 13% | (many diffs) | |
| 29 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NR_104094.1 | 11.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 627
- ORF length:
- 558
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGGCTGCTG GAGAGAATGA GGAAAGACTG GTTCATGGTC GGAATAGTGC 121 TGGCGATCGC TGGAGCTAAA CTGGAGCCGT CCATAGGGGT GAATGGGGGA CCACTGAAGC 181 CAGAAATAAC TGTATCCTAC ATTGCTGTTG CAACAATATT CTTTAACAGT GGACTATCAT 241 TGAAAACAGA GGAGCTGACC AGTGCTTTGG TGCATCTAAA ACTGCATCTT TTTATTCAGA 301 TCTTTACTCT TGCATTCTTC CCAGCAACAA TATGGCTTTT TCTTCAGCTT TTATCAATCA 361 CACCCATCAA CGAATGGCTT TTAAAAGGTT TGCAGACAGT AGGTTGCATG CCTCCGCCTG 421 TGTCTTCTGC AGTGATTTTA ACCAAGGCAG TTGGTGGAAA TGAGGCAGCT GCAATATTTA 481 ATTCAGCCTT TGGAAGTTTT TTGGGCATCG TTATAACACC CCTGCTCCTG CTGCTTTTTC 541 TTGGTTCATC TTCTTCTGTG CCTTTCACAT CTATTTTTTC TCAGCTTTTT ATGACTGTTG 601 TGGTTCCTCT CATCATTGGA CAGGAATTGC CAACTTTCTT GTACAAAGTt ggcattataa 661 gaaagcattg cttatcaatt tgttgcaacg aac