Construct: ORF TRCN0000481615
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012836.1_s317c1
- Derived from:
- ccsbBroadEn_12772
- DNA Barcode:
- TGCCGATCACAAAGCTGGCGATTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC10A7 (84068)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481615
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317818.2 | 100% | 100% | |
| 2 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317817.1 | 73.7% | 71.7% | (many diffs) |
| 3 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008692.1 | 73.7% | 71.7% | (many diffs) |
| 4 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008691.2 | 41.8% | 42.2% | 184_186delGAGinsCTT;189G>T;192_447delinsT |
| 5 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_032128.4 | 39.2% | 39.6% | 184_186delGAGinsCTT;189G>T;192_477delinsT |
| 6 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008690.2 | 38.2% | 38.6% | 184_186delGAGinsCTT;189G>T;192_489delinsT |
| 7 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_017008689.1 | 34.6% | 35% | 184_186delGAGinsCTT;189G>T;192_540delinsT |
| 8 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001317816.2 | 19% | 19.2% | 184_186delGAGinsCTT;189G>T;192_981delinsT |
| 9 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001029998.6 | 18.3% | 18.5% | 184_186delGAGinsCTT;189G>T;192_1020delinsT |
| 10 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XM_011532311.2 | 18% | 18.2% | 184_186delGAGinsCTT;189G>T;192_1035delinsT |
| 11 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NM_001300842.3 | 17.4% | 17.5% | 184_186delGAGinsCTT;189G>T;192_1074delinsT |
| 12 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_001741333.1 | 17.3% | (many diffs) | |
| 13 | human | 84068 | SLC10A7 | solute carrier family 10 me... | NR_133924.2 | 5.2% | (many diffs) | |
| 14 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_001741332.2 | 5.1% | (many diffs) | |
| 15 | human | 84068 | SLC10A7 | solute carrier family 10 me... | XR_938780.3 | 5% | (many diffs) | |
| 16 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_017313009.1 | 31.9% | 33.9% | (many diffs) |
| 17 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_006531491.2 | 31% | 32.9% | (many diffs) |
| 18 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_006531489.1 | 23.3% | 24.7% | (many diffs) |
| 19 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_011248545.1 | 22.6% | 24% | (many diffs) |
| 20 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_001282108.1 | 18% | 19.1% | (many diffs) |
| 21 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_001009981.2 | 17.2% | 18.2% | (many diffs) |
| 22 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | XM_006531488.1 | 16.4% | 17.4% | (many diffs) |
| 23 | mouse | 76775 | Slc10a7 | solute carrier family 10 (s... | NM_029736.2 | 15.7% | 16.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 288
- ORF end:
- 480
- ORF length:
- 192
- Sequence:
-
1 CCGGGCGCCG TCCAGGCACC TCGATTAGTT CTCGAGCTTT TGGAGTACGT CGTCTTTAGG 61 TTGGGGGGAG GGGTTTTATG CGATGGAGTT TCCCCACACT GAGTGGGTGG AGACTGAAGT 121 TAGGCCAGCT TGGCACTTGA TGTAATTCTC CTTGGAATTT GCCCTTTTTG AGTTTGGATC 181 TTGGTTCATT CTCAAGCCTC AGACAGTGGT TCAAAGTTTT TTTCTTCCAT TTCAGGTGTC 241 GTGAGGCTAG CATCGATTGA TCAACAAGTT TGTACAAAAA AGTTGGCATG AGGCTGCTGG 301 AGAGAATGAG GAAAGACTGG TTCATGGTCG GAATAGTGCT GGCGATCGCT GGAGCTAAAC 361 TGGAGCCGTC CATAGGGGTG AATGGGGGAC CACTGAAGCC AGAAATAACT GTATCCTACA 421 TTGCTGTTGC AACAATATTC TTTAACAGTG GACTATCATT GAAAACAGAG CTTCTTACTT 481 ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 541 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 601 TTTATATATC TTGTGGAAAG GACGATGCCG ATCACAAAGC TGGCGATTCA CGCGTTAAGT 661 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt