Construct: ORF TRCN0000468281
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018394.1_s317c1
- Derived from:
- ccsbBroadEn_11549
- DNA Barcode:
- AACATTAGGAAAGAACCCCCACCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF273 (10793)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468281
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 52.2% | 49.3% | (many diffs) |
| 2 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_024446791.1 | 49.7% | 45.6% | (many diffs) |
| 3 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348688.2 | 49% | 43.8% | (many diffs) |
| 4 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348689.2 | 48.9% | 41.9% | (many diffs) |
| 5 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256172.2 | 48.8% | 42.5% | (many diffs) |
| 6 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278665.2 | 46.3% | 42.3% | (many diffs) |
| 7 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329974.1 | 38.5% | 28.5% | (many diffs) |
| 8 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_145326.3 | 38% | 34.9% | (many diffs) |
| 9 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355241.2 | 35.2% | 33% | (many diffs) |
| 10 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 34.1% | 16.2% | (many diffs) |
| 11 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012129.1 | 34.1% | 29.2% | (many diffs) |
| 12 | human | 340252 | ZNF680 | zinc finger protein 680 | NM_001130022.1 | 33.9% | 30.8% | (many diffs) |
| 13 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329971.1 | 30.6% | 21.6% | (many diffs) |
| 14 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329973.1 | 30.4% | 21.5% | (many diffs) |
| 15 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355239.2 | 29.1% | 27.5% | (many diffs) |
| 16 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329972.1 | 25% | 19.6% | (many diffs) |
| 17 | human | 7757 | ZNF208 | zinc finger protein 208 | NR_138252.1 | 14.4% | (many diffs) | |
| 18 | human | 102724427 | LOC102724427 | uncharacterized LOC102724427 | XR_936398.2 | 10.4% | (many diffs) | |
| 19 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446635.1 | 9.4% | 8.6% | (many diffs) |
| 20 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446636.1 | 9.4% | 8.6% | (many diffs) |
| 21 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446637.1 | 9.4% | 8.6% | (many diffs) |
| 22 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446638.1 | 9.4% | 8.6% | (many diffs) |
| 23 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446639.1 | 9.4% | 8.6% | (many diffs) |
| 24 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446640.1 | 9.4% | 8.6% | (many diffs) |
| 25 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446641.1 | 9.4% | 8.6% | (many diffs) |
| 26 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_006715959.2 | 8.7% | 7.5% | (many diffs) |
| 27 | human | 113835 | ZNF257 | zinc finger protein 257 | NM_001316996.2 | 8.7% | 8% | (many diffs) |
| 28 | human | 7639 | ZNF85 | zinc finger protein 85 | NR_045830.2 | 8.4% | (many diffs) | |
| 29 | human | 10793 | ZNF273 | zinc finger protein 273 | NM_021148.2 | 8.3% | 7.6% | (many diffs) |
| 30 | human | 113835 | ZNF257 | zinc finger protein 257 | NM_033468.4 | 8.2% | 7.6% | (many diffs) |
| 31 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278661.1 | 7.1% | 6.3% | (many diffs) |
| 32 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 6.9% | 5.9% | (many diffs) |
| 33 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256653.1 | 5.3% | 4.6% | (many diffs) |
| 34 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001282359.1 | 5% | 4.3% | (many diffs) |
| 35 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_007153.3 | 3.3% | 2.4% | (many diffs) |
| 36 | human | 10793 | ZNF273 | zinc finger protein 273 | NR_003099.1 | 3.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 248
- ORF end:
- 395
- ORF length:
- 147
- Sequence:
-
1 TGGAGTACGT CGTCTTTAGG TTGGGGGGAG GGGTTTTATG CGATGGAGTT TCCCCACACT 61 GAGTGGGTGG AGACTGAAGT TAGGCCAGCT TGGCACTTGA TGTAATTCTC CTTGGAATTT 121 GCCCTTTTTG AGTTTGGATC TTGGTTCATT CTCAAGCCTC AGACAGTGGT TCAAAGTTTT 181 TTTCTTCCAT TTCAGGTGTC GTGAGGCTAG CATCGATTGA TCAACAAGTT TGTACAAAAA 241 AGTTGGCATG TTAGATAACT ACAGAAACCT GGTCTTCCTG GGTATTGCTG TCTCTAAGCC 301 AGACCTGATC ACTTGTCTGG AGCAAGGAAA AGAGCCCTGC AATATGAAGA GACATGCGAT 361 GGTAGCCAAA CCCCCAGGTT GGAGTGCAGT GGCGTGCCCA ACTTTCTTGT ACAAAGTGGT 421 TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC 481 TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA 541 AACATTAGGA AAGAACCCCC ACCCACGCGT TAAGTCgaca atcaacctct ggattacaaa 601 atttgtgaaa gatt