Construct: ORF TRCN0000469082
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004934.1_s317c1
- Derived from:
- ccsbBroadEn_13469
- DNA Barcode:
- CACTTTTCAGCTCGAAATTAAATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF718 (255403)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469082
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348280.2 | 81% | 66.6% | (many diffs) |
| 2 | human | 107986244 | LOC107986244 | zinc finger protein 141-like | XM_017008889.1 | 69.6% | 58.5% | (many diffs) |
| 3 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348279.2 | 57.3% | 50% | (many diffs) |
| 4 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_001348278.2 | 42.6% | 34.8% | (many diffs) |
| 5 | human | 255403 | ZNF718 | zinc finger protein 718 | NR_110527.1 | 21.8% | (many diffs) | |
| 6 | human | 255403 | ZNF718 | zinc finger protein 718 | NM_001039127.6 | 18.2% | 15.4% | (many diffs) |
| 7 | human | 7700 | ZNF141 | zinc finger protein 141 | NM_003441.4 | 18% | 14.7% | (many diffs) |
| 8 | human | 7700 | ZNF141 | zinc finger protein 141 | XM_017008591.2 | 16% | 12.9% | (many diffs) |
| 9 | human | 654254 | ZNF732 | zinc finger protein 732 | NM_001137608.3 | 14.1% | 11.4% | (many diffs) |
| 10 | human | 152687 | ZNF595 | zinc finger protein 595 | NM_182524.4 | 13.1% | 10.8% | (many diffs) |
| 11 | human | 255403 | ZNF718 | zinc finger protein 718 | NM_001289930.1 | 11.6% | 9% | (many diffs) |
| 12 | human | 255403 | ZNF718 | zinc finger protein 718 | NM_001289931.1 | 11.6% | 9% | (many diffs) |
| 13 | human | 255403 | ZNF718 | zinc finger protein 718 | XM_017007979.2 | 11.6% | 9% | (many diffs) |
| 14 | human | 255403 | ZNF718 | zinc finger protein 718 | XM_017007980.2 | 11.6% | 9% | (many diffs) |
| 15 | human | 112268317 | LOC112268317 | zinc finger protein 195-like | XR_002958858.1 | 10.1% | (many diffs) | |
| 16 | human | 152687 | ZNF595 | zinc finger protein 595 | XM_011513398.2 | 8.6% | 6.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 378
- ORF length:
- 288
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGAACTCTT AACATTCAAG GATGTGGCCA 121 TAGAATTCTC TCCAGAAGAG TGGAAATGTC TGGACATTTC CCAGCAGAAT TTATATAGAG 181 ATGTGATGTT GGAGAACTAC AGAAACCTGG TCTCCCTGGG TGTTACTATC TCTAACCCAG 241 ACCTGGTCAC CAGTCTGGAG CAAAGAAAAG AGCCCTACAA TTTGAAGATA CATGAAACAG 301 CAGCCAGACC CCCAGTGATC TCCCTTCAAG TTTACAGGGA GTGCCAGTGT CCACTTTATC 361 ACTTACAAAG GGCTACATGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 421 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 481 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGACACTTTT CAGCTCGAAA 541 TTAAATCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt