Construct: ORF TRCN0000471905
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008750.1_s317c1
- Derived from:
- ccsbBroadEn_08751
- DNA Barcode:
- ACTCCTGGGACCGGACATAAATCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DPP10 (57628)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471905
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_020868.6 | 99.8% | 99.6% | (many diffs) |
| 2 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321907.2 | 98.1% | 97.9% | (many diffs) |
| 3 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001178037.2 | 97.8% | 97.6% | (many diffs) |
| 4 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001178034.1 | 97.7% | 96.6% | (many diffs) |
| 5 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321906.1 | 97.5% | 97.3% | (many diffs) |
| 6 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001004360.4 | 97.5% | 97.2% | (many diffs) |
| 7 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321905.2 | 96.3% | 96% | (many diffs) |
| 8 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | XM_024453023.1 | 95.9% | 95.6% | (many diffs) |
| 9 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321908.2 | 93.8% | 93.2% | (many diffs) |
| 10 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | XM_017004566.1 | 93.8% | 91.9% | (many diffs) |
| 11 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001178036.2 | 93.5% | 93.4% | (many diffs) |
| 12 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321910.2 | 93.5% | 93.4% | (many diffs) |
| 13 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321911.2 | 93.5% | 93.4% | (many diffs) |
| 14 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321909.2 | 93.5% | 93.2% | (many diffs) |
| 15 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321912.2 | 85.4% | 84.7% | (many diffs) |
| 16 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321914.1 | 68% | 67.9% | 0_1ins762;100G>A |
| 17 | human | 57628 | DPP10 | dipeptidyl peptidase like 10 | NM_001321913.2 | 68% | 67.8% | 0_1ins762;100G>A;439G>A |
| 18 | mouse | 269109 | Dpp10 | dipeptidylpeptidase 10 | XM_006529626.3 | 86.9% | 89.4% | (many diffs) |
| 19 | mouse | 269109 | Dpp10 | dipeptidylpeptidase 10 | NM_199021.3 | 85.5% | 86.6% | (many diffs) |
| 20 | mouse | 269109 | Dpp10 | dipeptidylpeptidase 10 | XM_006529627.3 | 84.5% | 87% | (many diffs) |
| 21 | mouse | 269109 | Dpp10 | dipeptidylpeptidase 10 | XM_017320879.1 | 81.2% | 83.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2454
- ORF length:
- 2388
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa cctaactgcc agcgtgtccc atcacatcaa gtgtcaaccc tcaaaaacaa 121 tcaaggaact gggaagtaac agccctccac agagaaactg gaagggaatt gctattgctc 181 tgctggtgat tttagttgta tgctcactca tcactatgtc agtcatcctc ttaaccccag 241 atgaactcac aaattcgtca gaaaccagat tgtctttgga agacctcttt aggaaagact 301 ttgtgcttca cgatccagag gctcggtgga tcaatgatac agatgtggtg tataaaagcg 361 agaatggaca tgtcattaaa ctgaatatag aaacaaatgc taccacatta ttattggaaa 421 acacaacttt tgtaaccttc aaagcatcaa gacattcagt ttcaccagat ttaaaatatg 481 tccttctggc atatgatgtc aaacagattt ttcattattc atatactgct tcatatgtga 541 tttacaacat acacactagg gaagtttggg agttaaatcc tccagaagta gaggactccg 601 tcttgcagta cgcggcctgg ggtgtccaag ggcagcagct gatttatatt tttgaaaata 661 atatctacta tcaacctgat ataaagagca gttcattgcg actgacatct tctggaaaag 721 aagaaataat ttttaatggg attgctgact ggttatatga agaggaactc ctgcattctc 781 acatcgccca ctggtggtca ccagatggag aaagacttgc cttcctgatg ataaatgact 841 ctttggtacc caccatggtt atccctcggt ttactggagc gttgtatccc aaaggaaagc 901 agtatccgta tcctaaggca ggtcaaatga acccaacaat aaaattatat gttgtaaacc 961 tgtatggacc aactcacact ttggagctca tgccacctga cagctttaaa tcaagagaat 1021 actatatcac tatggttaaa tgggtaagca ataccaagac tgtggtaaga tggttaaacc 1081 gagctcagaa catctccatc ctcacagtct gtgagaccac tacaggtgct tgtagtaaaa 1141 aatatgagat gacatcagat acgtggctct ctcagcagaa tgaggagccc gtgttttcta 1201 gagacggcag caaattcttt atgacagtgc ctgttaagca agggggacgt ggagaatttc 1261 accacatagc tatgttcctc atccagagta aaagtgagca aattaccgtg cggcatctga 1321 catcaggaaa ctgggaagtg ataaagatct tggcatacga tgaaactact caaaaaattt 1381 actttctgag cactgaatct tctcccagag gaaggcagct gtacagtgct tctactgaag 1441 gattattgaa tcgccaatgc atttcatgta atttcatgaa agaacaatgt acatattttg 1501 atgccagttt tagtcccatg aatcaacatt tcttattatt ctgtgaaggt ccaagggtcc 1561 cagtggtcag cctacatagt acggacaacc cagcaaaata ttttatattg gaaagcaatt 1621 ctatgctgaa ggaagctatc ctgaagaaga agataggaaa gccagaaatt aaaatccttc 1681 atattgacga ctatgaactt cctttacagt tgtcccttcc caaagatttt atggaccgaa 1741 accagtatgc tcttctgtta ataatggatg aagaaccagg aggccagctg gttacagata 1801 agttccatat tgactgggat tccgtactca ttgacatgga taatgtcatt gtagcaagat 1861 ttgatggcag aggaagtgga ttccagggtc tgaaaatttt gcaggagatt catcgaagat 1921 taggttcagt agaagtaaag gaccaaataa cagctgtgaa atttttgctg aaactgcctt 1981 acattgactc caaaagatta agcatttttg gaaagggtta tggtggctat attgcatcaa 2041 tgatcttaaa atcagatgaa aagcttttta aatgtggatc cgtggttgca cctatcacag 2101 acttgaaatt gtatgcctca gctttctctg aaagatacct tgggatgcca tctaaggaag 2161 aaagcactta ccaggcagcc agtgtgctac ataatgttca tggcttgaaa gaagaaaata 2221 tattaataat tcatggaact gctgacacaa aagttcattt ccaacactca gcagaattaa 2281 tcaagcacct aataaaagct ggagtgaatt atactatgca ggtctaccca gatgaaggtc 2341 ataacgtatc tgagaagagc aagtatcatc tctacagcac aatcctcaaa ttcttcagtg 2401 attgtttgaa ggaagaaata tctgtgctaC CACAGGAACC AGAAGAAGAT GAATACCCAA 2461 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 2521 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 2581 TATCTTGTGG AAAGGACGAA CTCCTGGGAC CGGACATAAA TCAACGCGTT AAGTCgacaa 2641 tcaacctctg gattacaaaa tttgtgaaag att