Construct: ORF TRCN0000472158

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006796.1_s317c1
Derived from:
BRDN0000395167
DNA Barcode:
TCATGCCGTGGGTCGGGTCGCGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PBRM1 (55193)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472158
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55193 PBRM1 polybromo 1 XM_017006754.1 98.6% 98.6% 1_63del;85_86delGCinsTA;4096G>N
2 human 55193 PBRM1 polybromo 1 XM_017006752.1 98.1% 98% (many diffs)
3 human 55193 PBRM1 polybromo 1 NM_001366071.2 97.7% 97.7% (many diffs)
4 human 55193 PBRM1 polybromo 1 XM_005265279.5 96.8% 96.8% 22_23delGCinsTA;4033G>N;4498_4653del
5 human 55193 PBRM1 polybromo 1 XM_005265280.3 96.8% 96.8% 22_23delGCinsTA;4033G>N;4498_4653del
6 human 55193 PBRM1 polybromo 1 XM_005265282.4 96.8% 96.8% 22_23delGCinsTA;4033G>N;4498_4653del
7 human 55193 PBRM1 polybromo 1 XM_017006745.2 96.8% 96.8% 22_23delGCinsTA;4033G>N;4498_4653del
8 human 55193 PBRM1 polybromo 1 XM_017006746.2 96.8% 96.8% 22_23delGCinsTA;4033G>N;4498_4653del
9 human 55193 PBRM1 polybromo 1 NM_001350075.2 96.5% 95.7% (many diffs)
10 human 55193 PBRM1 polybromo 1 XM_017006758.1 96.5% 95.7% (many diffs)
11 human 55193 PBRM1 polybromo 1 XM_017006737.1 96.3% 96.3% (many diffs)
12 human 55193 PBRM1 polybromo 1 XM_017006738.2 96.3% 96.3% (many diffs)
13 human 55193 PBRM1 polybromo 1 XM_017006739.1 96.3% 96.3% (many diffs)
14 human 55193 PBRM1 polybromo 1 XM_017006740.1 96.3% 96.3% (many diffs)
15 human 55193 PBRM1 polybromo 1 XM_017006748.1 96% 95.9% (many diffs)
16 human 55193 PBRM1 polybromo 1 XM_017006749.1 96% 95.9% (many diffs)
17 human 55193 PBRM1 polybromo 1 XM_017006750.1 96% 95.9% (many diffs)
18 human 55193 PBRM1 polybromo 1 XM_017006733.2 95.9% 95.8% (many diffs)
19 human 55193 PBRM1 polybromo 1 XM_017006734.2 95.9% 95.8% (many diffs)
20 human 55193 PBRM1 polybromo 1 XM_024453618.1 95.8% 95.8% (many diffs)
21 human 55193 PBRM1 polybromo 1 XM_024453619.1 95.8% 95.8% (many diffs)
22 human 55193 PBRM1 polybromo 1 XM_011533900.3 95.7% 95.6% (many diffs)
23 human 55193 PBRM1 polybromo 1 XM_011533902.3 95.7% 95.6% (many diffs)
24 human 55193 PBRM1 polybromo 1 XM_011533903.3 95.7% 95.6% (many diffs)
25 human 55193 PBRM1 polybromo 1 NM_181042.5 95.7% 95.6% (many diffs)
26 human 55193 PBRM1 polybromo 1 XM_017006753.2 95.6% 94.9% (many diffs)
27 human 55193 PBRM1 polybromo 1 XM_017006732.1 95.6% 95.5% (many diffs)
28 human 55193 PBRM1 polybromo 1 NM_001350077.2 95.5% 95.5% (many diffs)
29 human 55193 PBRM1 polybromo 1 NM_001350074.2 95.3% 95.3% (many diffs)
30 human 55193 PBRM1 polybromo 1 NM_001350078.2 95.3% 95.3% (many diffs)
31 human 55193 PBRM1 polybromo 1 NM_001366070.2 95.3% 95.3% (many diffs)
32 human 55193 PBRM1 polybromo 1 XM_017006730.1 95.3% 95.3% (many diffs)
33 human 55193 PBRM1 polybromo 1 XM_017006731.1 95.3% 95.3% (many diffs)
34 human 55193 PBRM1 polybromo 1 NM_001350076.2 95.3% 95.2% (many diffs)
35 human 55193 PBRM1 polybromo 1 XM_017006755.2 95.3% 94.5% (many diffs)
36 human 55193 PBRM1 polybromo 1 XM_017006756.2 95.2% 94.5% (many diffs)
37 human 55193 PBRM1 polybromo 1 XM_017006725.1 95.2% 95.1% (many diffs)
38 human 55193 PBRM1 polybromo 1 XM_017006726.1 95.2% 95.1% (many diffs)
39 human 55193 PBRM1 polybromo 1 XM_017006727.1 95.2% 95.1% (many diffs)
40 human 55193 PBRM1 polybromo 1 XM_017006728.1 95.2% 95.1% (many diffs)
41 human 55193 PBRM1 polybromo 1 XM_017006729.2 95.1% 95% (many diffs)
42 human 55193 PBRM1 polybromo 1 XM_017006744.1 95% 94.9% (many diffs)
43 human 55193 PBRM1 polybromo 1 XM_017006741.2 94.8% 94.7% (many diffs)
44 human 55193 PBRM1 polybromo 1 XM_017006742.1 94.8% 94.7% (many diffs)
45 human 55193 PBRM1 polybromo 1 NM_001366074.2 94.7% 94.6% (many diffs)
46 human 55193 PBRM1 polybromo 1 NM_001366073.2 94.6% 94.6% (many diffs)
47 human 55193 PBRM1 polybromo 1 NM_001366072.2 94.5% 94.4% (many diffs)
48 human 55193 PBRM1 polybromo 1 XM_017006764.2 94.5% 94.4% (many diffs)
49 human 55193 PBRM1 polybromo 1 XM_017006735.2 94.3% 94.2% (many diffs)
50 human 55193 PBRM1 polybromo 1 XM_017006736.1 94.2% 94.2% (many diffs)
51 human 55193 PBRM1 polybromo 1 NM_001366075.2 93.9% 93.8% (many diffs)
52 human 55193 PBRM1 polybromo 1 XM_017006759.2 93.8% 93.1% (many diffs)
53 human 55193 PBRM1 polybromo 1 XM_017006743.2 93.7% 93.7% (many diffs)
54 human 55193 PBRM1 polybromo 1 NM_001366076.2 93.6% 93.5% (many diffs)
55 human 55193 PBRM1 polybromo 1 XM_017006751.2 93.3% 93.3% (many diffs)
56 human 55193 PBRM1 polybromo 1 NM_018313.5 93.3% 92.6% (many diffs)
57 human 55193 PBRM1 polybromo 1 XM_017006747.1 93.3% 93.2% (many diffs)
58 human 55193 PBRM1 polybromo 1 NM_001350079.2 93% 92.9% (many diffs)
59 human 55193 PBRM1 polybromo 1 XR_001740194.2 56.1% (many diffs)
60 mouse 66923 Pbrm1 polybromo 1 XM_017316159.1 91.6% 97% (many diffs)
61 mouse 66923 Pbrm1 polybromo 1 XM_017316156.1 91.5% 96.9% (many diffs)
62 mouse 66923 Pbrm1 polybromo 1 XM_006519421.3 91.3% 96.7% (many diffs)
63 mouse 66923 Pbrm1 polybromo 1 XM_006519418.3 91.1% 96.4% (many diffs)
64 mouse 66923 Pbrm1 polybromo 1 NM_001081251.1 89.7% 95% (many diffs)
65 mouse 66923 Pbrm1 polybromo 1 XM_006519412.3 89.4% 94.7% (many diffs)
66 mouse 66923 Pbrm1 polybromo 1 XM_006519413.3 89.4% 94.7% (many diffs)
67 mouse 66923 Pbrm1 polybromo 1 XM_006519414.3 89.4% 94.7% (many diffs)
68 mouse 66923 Pbrm1 polybromo 1 XM_017316146.1 89.4% 94.7% (many diffs)
69 mouse 66923 Pbrm1 polybromo 1 XM_006519422.3 89% 93.6% (many diffs)
70 mouse 66923 Pbrm1 polybromo 1 XM_006519420.3 88.7% 93.3% (many diffs)
71 mouse 66923 Pbrm1 polybromo 1 XM_006519409.3 88.6% 93.8% (many diffs)
72 mouse 66923 Pbrm1 polybromo 1 XM_006519416.1 88.5% 93.8% (many diffs)
73 mouse 66923 Pbrm1 polybromo 1 XM_006519408.3 88.5% 93.8% (many diffs)
74 mouse 66923 Pbrm1 polybromo 1 XM_017316142.1 88.5% 93.8% (many diffs)
75 mouse 66923 Pbrm1 polybromo 1 XM_006519407.3 88.5% 93.7% (many diffs)
76 mouse 66923 Pbrm1 polybromo 1 XM_017316140.1 88.5% 93.7% (many diffs)
77 mouse 66923 Pbrm1 polybromo 1 XM_017316141.1 88.5% 93.7% (many diffs)
78 mouse 66923 Pbrm1 polybromo 1 XM_006519406.3 88.4% 93.6% (many diffs)
79 mouse 66923 Pbrm1 polybromo 1 XM_017316139.1 88.4% 93.6% (many diffs)
80 mouse 66923 Pbrm1 polybromo 1 XM_006519402.3 88.3% 93.5% (many diffs)
81 mouse 66923 Pbrm1 polybromo 1 XM_006519403.1 88.3% 93.5% (many diffs)
82 mouse 66923 Pbrm1 polybromo 1 XM_006519405.3 88.3% 93.5% (many diffs)
83 mouse 66923 Pbrm1 polybromo 1 XM_017316137.1 88.3% 93.5% (many diffs)
84 mouse 66923 Pbrm1 polybromo 1 XM_017316138.1 88.3% 93.5% (many diffs)
85 mouse 66923 Pbrm1 polybromo 1 XM_006519423.3 88.1% 92.7% (many diffs)
86 mouse 66923 Pbrm1 polybromo 1 XM_006519426.3 88% 93.4% (many diffs)
87 mouse 66923 Pbrm1 polybromo 1 XM_006519425.3 87.8% 93.2% (many diffs)
88 mouse 66923 Pbrm1 polybromo 1 XM_006519411.3 87.7% 92.9% (many diffs)
89 mouse 66923 Pbrm1 polybromo 1 XM_006519419.2 87.7% 92.9% (many diffs)
90 mouse 66923 Pbrm1 polybromo 1 XM_017316145.1 87.5% 92.7% (many diffs)
91 mouse 66923 Pbrm1 polybromo 1 XM_006519410.3 87.5% 92.7% (many diffs)
92 mouse 66923 Pbrm1 polybromo 1 XM_017316143.1 87.5% 92.7% (many diffs)
93 mouse 66923 Pbrm1 polybromo 1 XM_017316144.1 87.5% 92.7% (many diffs)
94 mouse 66923 Pbrm1 polybromo 1 XM_006519427.3 87.2% 92.5% (many diffs)
95 mouse 66923 Pbrm1 polybromo 1 XM_017316153.1 87% 92.2% (many diffs)
96 mouse 66923 Pbrm1 polybromo 1 XM_017316157.1 86.8% 92.1% (many diffs)
97 mouse 66923 Pbrm1 polybromo 1 XM_017316158.1 86.8% 92.1% (many diffs)
98 mouse 66923 Pbrm1 polybromo 1 XM_017316152.1 86.8% 92% (many diffs)
99 mouse 66923 Pbrm1 polybromo 1 XM_017316150.1 86.8% 92% (many diffs)
100 mouse 66923 Pbrm1 polybromo 1 XM_017316151.1 86.8% 92% (many diffs)
101 mouse 66923 Pbrm1 polybromo 1 XM_017316148.1 86.7% 91.9% (many diffs)
102 mouse 66923 Pbrm1 polybromo 1 XM_017316149.1 86.7% 91.9% (many diffs)
103 mouse 66923 Pbrm1 polybromo 1 XM_006519415.3 86.6% 91.8% (many diffs)
104 mouse 66923 Pbrm1 polybromo 1 XM_017316147.1 86.6% 91.8% (many diffs)
105 mouse 66923 Pbrm1 polybromo 1 XM_006519424.3 86.4% 90.9% (many diffs)
106 mouse 66923 Pbrm1 polybromo 1 XM_017316160.1 86.3% 91.6% (many diffs)
107 mouse 66923 Pbrm1 polybromo 1 XM_017316155.1 85.9% 91.1% (many diffs)
108 mouse 66923 Pbrm1 polybromo 1 XM_017316154.1 85.8% 91% (many diffs)
109 mouse 66923 Pbrm1 polybromo 1 XM_006519417.1 85.8% 90.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
5025
ORF length:
4956
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggttccaag agaagaagat atacctcccc ttccagcagt gtcagcgggg
121actttgatga tgggcaccat tctgtgtcaa caccaggccc aagcaggaaa aggaggagac
181tttccaatct tccaactgta gatcctattg ccgtgtgcca tgaactctat aataccatcc
241gagactataa ggatgaacag ggcagacttc tctgtgagct cttcattagg gcaccaaagc
301gaagaaatca accagactat tatgaagtgg tttctcagcc cattgacttg atgaaaatcc
361aacagaaact aaaaatggaa gagtatgatg atgttaattt gctgactgct gacttccagc
421ttctttttaa caatgcaaag tcctattata agccagattc tcctgaatat aaagccgctt
481gcaaactctg ggatttgtac cttcgaacaa gaaatgagtt tgttcagaaa ggagaagcag
541atgacgaaga tgatgatgaa gatgggcaag acaatcaggg cacagtgact gaaggatctt
601ctccagctta cttgaaggag atcctggagc agcttcttga agccatagtt gtagctacaa
661atccatcagg acgtctcatt agcgaacttt ttcagaaact gccttctaaa gtgcaatatc
721cagattatta tgcaataatt aaggagccta tagatctcaa gaccattgcc cagaggatac
781agaatggaag ctacaaaagt attcatgcaa tggccaaaga tatagatctc ctcgcaaaaa
841atgccaaaac ttataatgag cctggctctc aagtattcaa ggatgcaaat tcaattaaaa
901aaatatttta tatgaaaaag gctgaaattg aacatcatga aatggctaag tcaagtcttc
961gaatgaggac tccatccaac ttggctgcag ccagactgac aggtccttca cacagtaaag
1021gcagccttgg tgaagagaga aatcccacta gcaagtatta ccgtaataaa agagcagtac
1081aaggaggtcg tttatcagca attacaatgg cacttcaata tggctcagaa agtgaagaag
1141atgctgcttt agctgctgca cgctatgaag agggagagtc agaagcagaa agcatcactt
1201cctttatgga tgtttcaaat cctttttatc agctttatga cacagttagg agttgtcgga
1261ataaccaagg gcagctaata gctgaacctt tttaccattt gccttcaaag aaaaaatacc
1321ctgattatta ccagcaaatt aaaatgccca tatcactaca acagatccga acaaaactga
1381agaatcaaga atatgaaact ttagatcatt tggagtgtga tctgaattta atgtttgaaa
1441atgccaaacg ctataatgtg cccaattcag ccatctacaa gcgagttcta aaattgcagc
1501aagttatgca ggcaaagaag aaagagcttg ccaggagaga cgatatcgag gacggagaca
1561gcatgatctc ttcagccacc tctgatactg gtagtgccaa aagaaaaagg aacactcatg
1621acagtgagat gttgggtctc aggaggctat ccagtaaaaa gaacataaga aagcagcgaa
1681tgaaaatctt attcaatgtt gttcttgaag ctcgagagcc aggttcaggc agaagacttt
1741gtgacctatt tatggttaaa ccatccaaaa aggactatcc tgattattat aaaatcatct
1801tggagccaat ggacttgaaa ataattgagc ataacatccg caatgacaaa tatgctggtg
1861aagagggaat gatagaagac atgaagctga tgttccggaa tgccaggcac tataatgagg
1921agggctccca ggtttataat gatgcacata tcctggagaa gttactcaag gagaaaagga
1981aagagctggg cccactgcct gatgatgatg acatggcttc tcccaaactc aagctgagta
2041ggaagagtgg catttctcct aaaaaatcaa aatacatgac tccaatgcag cagaaactaa
2101atgaggtcta tgaagctgta aagaactata ctgataagag gggtcgccgc ctcagtgcca
2161tatttctgag gcttccctct agatctgagt tgcctgacta ctatctgact attaaaaagc
2221ccatggacat ggaaaaaatt cgaagtcaca tgatggccaa caagtaccaa gatattgact
2281ctatggttga ggactttgtc atgatgttta ataatgcctg tacatacaat gagccggagt
2341ctttgatcta caaagatgct cttgttctac acaaagtcct gcttgaaaca cgcagagacc
2401tggagggaga tgaggactct catgtcccaa atgtgacttt gctgattcaa gagcttatcc
2461acaatctttt tgtgtcagtc atgagtcatc aggatgatga gggaagatgc tacagcgatt
2521ctttagcaga aattcctgct gtggatccca actttcctaa caaaccaccc cttacatttg
2581acataattag gaagaatgtt gaaaataatc gctaccgtcg gcttgattta tttcaagagc
2641atatgtttga agtattggaa cgagcaagaa ggatgaatcg gacagattca gaaatatatg
2701aagatgcagt agaacttcag cagtttttta ttaaaattcg tgatgaactc tgcaaaaatg
2761gagagattct tctttcaccg gcactcagct ataccacaaa acatttgcat aatgatgtgg
2821agaaagagag aaaggaaaaa ttgccaaaag aaatagagga agataaacta aaacgagaag
2881aagaaaaaag agaagctgaa aagagtgaag attcctctgg tgctgcaggc ctctcaggct
2941tacatcgcac atacagccag gactgtagct ttaaaaacag catgtaccat gttggagatt
3001acgtctatgt ggaacctgca gaggccaacc tacaaccaca tatcgtctgt attgaaagac
3061tgtgggagga ttcagctggt gaaaaatggt tgtatggctg ttggttttac cgaccaaatg
3121aaacattcca cctggctaca cgaaaatttc tagaaaaaga agtttttaag agtgactatt
3181acaacaaagt tccagttagt aaaattctag gcaagtgtgt ggtcatgttt gtcaaggaat
3241actttaagtt atgcccagaa aacttccgag atgaggatgt ttttgtctgt gaatcacggt
3301attctgccaa aaccaaatct tttaagaaaa ttaaactgtg gaccatgccc atcagctcag
3361tcaggtttgt ccctcgggat gtgcctctgc ctgtggttcg cgtggcctct gtatttgcaa
3421atgcagataa aggtgatgat gagaagaata cagacaactc agaggacagt cgagctgaag
3481acaattttaa cttggaaaag gaaaaagaag atgtccctgt ggaaatgtcc aatggtgaac
3541caggttgcca ctactttgag cagctccatt acaatgacat gtggctgaag gttggcgact
3601gtgtcttcat caagtcccat ggcctggtgc gtcctcgtgt gggcagaatt gaaaaagtat
3661gggttcgaga tggagctgca tatttttatg gccccatctt cattcaccca gaagaaacag
3721agcatgagcc cacaaaaatg ttctacaaaa aagaagtatt tctgagtaat ctggaagaaa
3781cctgccccat gacatgtatt ctcggaaagt gtgctgtgtt gtcattcaag gacttcctct
3841cctgcaggcc aactgaaata ccagaaaatg acattctgct ttgtgagagc cgctacaatg
3901agagcgacaa gcagatgaag aaattcaaag gattgaagag gttttcactc tctgctaaag
3961tggtagatga tgaaatttac tacttcagaa aaccaattgt tcctcagaag gagccatcac
4021ctttgctgga aaagaagatc cagttgctag aagctaaatt tgccgagtta gaaggtggag
4081atgatgatat tgaagagatg ngagaagaag atagtgaggt cattgaacct ccttctctac
4141ctcagcttca gacccccctg gccagtgagc tggacctcat gccctacaca cccccacagt
4201ctaccccaaa gtctgccaaa ggcagtgcaa agaaggaagg ctccaaacgg aaaatcaaca
4261tgagtggcta catcctgttc agcagtgaga tgagggctgt gattaaggcc caacacccag
4321actactcttt cggggagctc agccgcctgg tggggacaga atggagaaat cttgagacag
4381ccaagaaagc agaatatgaa gagcgggcag ctaaagttgc tgagcagcag gagagagagc
4441gagcagcaca gcaacagcag ccgagtgctt ctccccgagc aggcacccct gtgggggctc
4501tcatgggggt ggtgccacca ccaacaccaa tggggatgct caatcagcag ttgacacctg
4561ttgcaggtgt gatgaaccaa ggagtggccc ctatggtagg gactccagca ccaggtggaa
4621gtccatatgg acaacaggtg GGAGTTTTGG GGCCTCCAGG GCAGCAGGCA CCACCTCCAT
4681ATCCCGGCCC ACATCCAGCT GGACCCCCTG TCATACAGCA GCCAACAACA CCCATGTTTG
4741TAGCTCCCCC ACCAAAGACC CAGCGGCTTC TTCACTCAGA GGCCTACCTG AAATACATTG
4801AAGGACTCAG TGCGGAGTCC AACAGCATTA GCAAGTGGGA TCAGACACTG GCAGCTCGAA
4861GACGCGACGT CCATTTGTCG AAAGAACAGG AGAGCCGCCT ACCCTCTCAC TGGCTGAAAA
4921GCAAAGGGGC CCACACCACC ATGGCAGATG CCCTCTGGCG CCTTCGAGAT TTGATGCTCC
4981GGGACACCCT CAACATTCGC CAAGCATACA ACCTAGAAAA TGTTTTGCCA ACTTTCTTGT
5041ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
5101AGTAATGAAC TAGTCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG
5161AAAGGACGAT CATGCCGTGG GTCGGGTCGC GACACGCGTT AAGTCgacaa tcaacctctg
5221gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)