Construct: ORF TRCN0000473343
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001836.1_s317c1
- Derived from:
- ccsbBroadEn_13646
- DNA Barcode:
- CGTTTTTTTACCTCATATCTGGTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF808 (388558)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473343
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 107987264 | LOC107987264 | putative zinc finger protei... | XR_002958390.1 | 22.1% | (many diffs) | |
| 2 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351773.1 | 11.3% | 1.4% | (many diffs) |
| 3 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351774.2 | 11.3% | 1.4% | (many diffs) |
| 4 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351775.2 | 11.3% | 1.4% | (many diffs) |
| 5 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351776.2 | 11.3% | 1.4% | (many diffs) |
| 6 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_207333.3 | 11.3% | 1.4% | (many diffs) |
| 7 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958279.1 | 8.1% | (many diffs) | |
| 8 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958278.1 | 8.1% | (many diffs) | |
| 9 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958277.1 | 8% | (many diffs) | |
| 10 | human | 7696 | ZNF137P | zinc finger protein 137, ps... | NR_023311.1 | 8% | (many diffs) | |
| 11 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958275.1 | 7.7% | (many diffs) | |
| 12 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_002958276.1 | 7.7% | (many diffs) | |
| 13 | human | 162967 | ZNF320 | zinc finger protein 320 | XR_001753616.2 | 7.3% | (many diffs) | |
| 14 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 5.3% | (many diffs) | |
| 15 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 5% | (many diffs) | |
| 16 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 5% | (many diffs) | |
| 17 | human | 344787 | ZNF860 | zinc finger protein 860 | NM_001137674.3 | 4.9% | 2.4% | (many diffs) |
| 18 | human | 344787 | ZNF860 | zinc finger protein 860 | XM_017006299.1 | 4.9% | 2.4% | (many diffs) |
| 19 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 4.8% | (many diffs) | |
| 20 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 4.3% | (many diffs) | |
| 21 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 4.2% | (many diffs) | |
| 22 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 4.2% | (many diffs) | |
| 23 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 239
- ORF end:
- 464
- ORF length:
- 225
- Sequence:
-
1 TCGTCTTTAG GTTGGGGGGA GGGGTTTTAT GCGATGGAGT TTCCCCACAC TGAGTGGGTG 61 GAGACTGAAG TTAGGCCAGC TTGGCACTTG ATGTAATTCT CCTTGGAATT TGCCCTTTTT 121 GAGTTTGGAT CTTGGTTCAT TCTCAAGCCT CAGACAGTGG TTCAAAGTTT TTTTCTTCCA 181 TTTCAGGTGT CGTGAGGCTA GCATCGATTG ATCAACAAGT TTGTACAAAA AAGTTGGCAT 241 GATTGTGGCA AAGCCTTTAC TTCACATTCA CACCTCGTTG GACATCAGAG AATCCATACT 301 GGACAGAAAT CTTGCAAATG TCATCAGTGT GGCAAGGTCT TCAGTCCGAG GTCACTCCTT 361 GCAGAACATG AGAAAATTCA TTTTTGAGAT AACTGTTCCC AATGCAGTGA GTATAGCAAA 421 CCATCAAGCA TTAATTGACA TTGGAGTCAA TTCAGCATTG ACTTGCCCAA CTTTCTTGTA 481 CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA 541 GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG 601 AAAGGACGAC GTTTTTTTAC CTCATATCTG GTTACGCGTT AAGTCgacaa tcaacctctg 661 gattacaaaa tttgtgaaag att