Construct: ORF TRCN0000487781
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020498.1_s317c1
- DNA Barcode:
- TATCAACCTAAGCCATCACCAAAC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1D (1453)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487781
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_139062.4 | 100% | 100% | |
| 2 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_001893.6 | 96.1% | 95.4% | (many diffs) |
| 3 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_001363749.2 | 94.8% | 93.9% | (many diffs) |
| 4 | human | 1453 | CSNK1D | casein kinase 1 delta | XM_005256336.4 | 89.1% | 88.7% | (many diffs) |
| 5 | human | 102800317 | TPTEP2-CSNK1E | TPTEP2-CSNK1E readthrough | NM_001289912.2 | 77.9% | 84.3% | (many diffs) |
| 6 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_001894.4 | 77.9% | 84.3% | (many diffs) |
| 7 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_152221.3 | 77.9% | 84.3% | (many diffs) |
| 8 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_243518.4 | 30.4% | (many diffs) | |
| 9 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_933922.3 | 30.2% | (many diffs) | |
| 10 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_430028.4 | 29% | 1_319del;1205_1686del;2029_4228del | |
| 11 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_002957961.1 | 28.3% | (many diffs) | |
| 12 | human | 1453 | CSNK1D | casein kinase 1 delta | XR_933923.3 | 27.1% | (many diffs) | |
| 13 | human | 1453 | CSNK1D | casein kinase 1 delta | NR_110578.2 | 26.2% | 1_369del;703_704ins229;1368_3572del | |
| 14 | mouse | 104318 | Csnk1d | casein kinase 1, delta | NM_027874.2 | 90% | 99.7% | (many diffs) |
| 15 | mouse | 104318 | Csnk1d | casein kinase 1, delta | NM_139059.2 | 87.1% | 95.2% | (many diffs) |
| 16 | mouse | 104318 | Csnk1d | casein kinase 1, delta | XM_011248662.1 | 85.2% | 93.4% | (many diffs) |
| 17 | mouse | 104318 | Csnk1d | casein kinase 1, delta | XM_011248663.2 | 85.2% | 93.4% | (many diffs) |
| 18 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_001289899.1 | 70.4% | 71.1% | (many diffs) |
| 19 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316660.1 | 70.4% | 71.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1299
- ORF length:
- 1227
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggagctg agagtcggga acaggtaccg gctgggccgg aagatcggca 121 gcggctcctt cggagacatc tatctcggta cggacattgc tgcaggagaa gaggttgcca 181 tcaagcttga atgtgtcaaa accaaacacc ctcagctcca cattgagagc aaaatctaca 241 agatgatgca gggaggagtg ggcatcccca ccatcagatg gtgcggggca gagggggact 301 acaacgtcat ggtgatggag ctgctggggc caagcctgga ggacctcttc aacttctgct 361 ccaggaaatt cagcctcaaa accgtcctgc tgcttgctga ccaaatgatc agtcgcatcg 421 aatacattca ttcaaagaac ttcatccacc gggatgtgaa gccagacaac ttcctcatgg 481 gcctggggaa gaagggcaac ctggtgtaca tcatcgactt cgggctggcc aagaagtacc 541 gggatgcacg cacccaccag cacatcccct atcgtgagaa caagaacctc acggggacgg 601 cgcggtacgc ctccatcaac acgcaccttg gaattgaaca atcccgaaga gatgacttgg 661 agtctctggg ctacgtgcta atgtacttca acctgggctc tctcccctgg caggggctga 721 aggctgccac caagagacag aaatacgaaa ggattagcga gaagaaaatg tccaccccca 781 tcgaagtgtt gtgtaaaggc tacccttccg aatttgccac atacctgaat ttctgccgtt 841 ccttgcgttt tgacgacaag cctgactact cgtacctgcg gcagcttttc cggaatctgt 901 tccatcgcca gggcttctcc tatgactacg tgttcgactg gaacatgctc aaatttggtg 961 ccagccgggc cgccgatgac gccgagcggg agcgcaggga ccgagaggag cggctgagac 1021 actcgcggaa cccggctacc cgcggcctcc cttccacagc ctccggccgc ctgcggggga 1081 cgcaggaagt ggctcccCCC ACACCCCTCA CCCCTACCTC ACACACGGCT AACACCTCCC 1141 CCCGGCCCGT CTCCGGCATG GAGAGAGAGC GGAAAGTGAG TATGCGGCTG CACCGCGGGG 1201 CCCCCGTCAA CATCTCCTCG TCCGACCTCA CAGGCCGACA AGATACCTCT CGCATGTCCA 1261 CCTCACAGAA TAGCATTCCT TTCGAACACC ACGGCAAGTA GGACCCAGCT TTCTTGTACA 1321 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1381 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1441 AGGACGATAT CAACCTAAGC CATCACCAAA CACGCGTTAA GTCgacaatc aacctctgga 1501 ttacaaaatt tgtgaaagat t