Construct: ORF ccsbBroad304_00907
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003549.1_s304c1, BRDN0000401619
- Derived from:
- ccsbBroadEn_00907
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR3DL2 (3812)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00907
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_006737.4 | 100% | 100% | |
| 2 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | NM_001242867.2 | 96.2% | 96.2% | 948_949ins51 |
| 3 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_011526940.3 | 92.3% | 92% | 1000_1001ins105 |
| 4 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_013289.2 | 90.9% | 83.5% | (many diffs) |
| 5 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | NM_001322168.1 | 90.7% | 83.2% | (many diffs) |
| 6 | human | 115653 | KIR3DL3 | killer cell immunoglobulin ... | NM_153443.4 | 79.2% | 70.5% | (many diffs) |
| 7 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001083539.2 | 77.4% | 68.7% | (many diffs) |
| 8 | human | 112268355 | LOC112268355 | killer cell immunoglobulin-... | NM_001368254.1 | 77.4% | 68.7% | (many diffs) |
| 9 | human | 3812 | KIR3DL2 | killer cell immunoglobulin ... | XM_017026784.2 | 74.7% | 73.4% | (many diffs) |
| 10 | human | 3811 | KIR3DL1 | killer cell immunoglobulin ... | XM_017030274.1 | 71.3% | 53.5% | (many diffs) |
| 11 | human | 3803 | KIR2DL2 | killer cell immunoglobulin ... | NM_014219.2 | 70.2% | 64.6% | (many diffs) |
| 12 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | NM_014218.3 | 70.1% | 63.9% | (many diffs) |
| 13 | human | 112267881 | LOC112267881 | killer cell immunoglobulin-... | NM_001368251.1 | 69.9% | 63.5% | (many diffs) |
| 14 | human | 3804 | KIR2DL3 | killer cell immunoglobulin ... | NM_015868.3 | 69.1% | 63.7% | (many diffs) |
| 15 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291695.1 | 68.2% | 62.6% | (many diffs) |
| 16 | human | 57292 | KIR2DL5A | killer cell immunoglobulin ... | NM_020535.3 | 65.1% | 54.6% | (many diffs) |
| 17 | human | 553128 | KIR2DL5B | killer cell immunoglobulin ... | NM_001018081.1 | 64.6% | 53.6% | (many diffs) |
| 18 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_002255.6 | 63.7% | 53.6% | (many diffs) |
| 19 | human | 112268354 | LOC112268354 | killer cell immunoglobulin-... | NM_001368253.1 | 63.7% | 53.4% | (many diffs) |
| 20 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_012312.4 | 61.2% | 56.4% | (many diffs) |
| 21 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | XM_017030275.2 | 61.2% | 56.4% | (many diffs) |
| 22 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | NM_014512.1 | 60.8% | 55.3% | (many diffs) |
| 23 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_012314.6 | 60.6% | 55.8% | (many diffs) |
| 24 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_011547998.2 | 60.6% | 55.1% | (many diffs) |
| 25 | human | 3810 | KIR2DS5 | killer cell immunoglobulin ... | NM_014513.2 | 60.4% | 54.5% | (many diffs) |
| 26 | human | 102725023 | LOC102725023 | killer cell immunoglobulin-... | NM_001360171.1 | 60.4% | 54.5% | (many diffs) |
| 27 | human | 3808 | KIR2DS3 | killer cell immunoglobulin ... | NM_012313.1 | 60.2% | 54.2% | (many diffs) |
| 28 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026782.1 | 59% | 53.6% | (many diffs) |
| 29 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282170.1 | 58% | 51.4% | (many diffs) |
| 30 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291701.1 | 57.9% | 53.6% | (many diffs) |
| 31 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080770.2 | 57.6% | 48.6% | (many diffs) |
| 32 | human | 3813 | KIR3DS1 | killer cell immunoglobulin ... | NM_001282171.1 | 55.7% | 47.8% | (many diffs) |
| 33 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452542.1 | 55.6% | 46.3% | (many diffs) |
| 34 | human | 3805 | KIR2DL4 | killer cell immunoglobulin ... | NM_001080772.2 | 50.6% | 43.5% | (many diffs) |
| 35 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452543.1 | 49.5% | 44.8% | (many diffs) |
| 36 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452544.1 | 49.5% | 44.8% | (many diffs) |
| 37 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_024452545.1 | 49.5% | 44.8% | (many diffs) |
| 38 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_017026783.1 | 49% | 43.7% | (many diffs) |
| 39 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281971.2 | 47.9% | 30.9% | (many diffs) |
| 40 | human | 3806 | KIR2DS1 | killer cell immunoglobulin ... | XM_017030286.1 | 47% | 41.3% | (many diffs) |
| 41 | human | 3802 | KIR2DL1 | killer cell immunoglobulin ... | XM_011526939.2 | 46.9% | 41% | (many diffs) |
| 42 | human | 3809 | KIR2DS4 | killer cell immunoglobulin ... | NM_001281972.2 | 44.6% | 32.4% | (many diffs) |
| 43 | human | 100132285 | KIR2DS2 | killer cell immunoglobulin ... | NM_001291696.1 | 39.9% | 34.9% | (many diffs) |
| 44 | human | 107987438 | LOC107987438 | uncharacterized LOC107987438 | XR_001756645.1 | 23% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1434
- ORF length:
- 1365
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcgctcacg gtcgtcagca tggcgtgcgt tgggttcttc ttgctgcagg 121 gggcctggcc actcatgggt ggtcaggaca aacccttcct gtctgcccgg cccagcactg 181 tggtgcctcg aggaggacac gtggctcttc agtgtcacta tcgtcgtggg tttaacaatt 241 tcatgctgta caaagaagac agaagccacg ttcccatctt ccacggcaga atattccagg 301 agagcttcat catgggccct gtgaccccag cacatgcagg gacctacaga tgtcggggtt 361 cacgcccaca ctccctcact gggtggtcgg cacccagcaa ccccctggtg atcatggtca 421 caggaaacca cagaaaacct tccctcctgg cccacccagg gcccctgctg aaatcaggag 481 agacagtcat cctgcaatgt tggtcagatg tcatgtttga gcacttcttt ctgcacagag 541 aggggatctc tgaggacccc tcacgcctcg ttggacagat ccatgatggg gtctccaagg 601 ccaacttctc catcggtccc ttgatgcctg tccttgcagg aacctacaga tgttatggtt 661 ctgttcctca ctccccctat cagttgtcag ctcccagtga ccccctggac atcgtgatca 721 caggtctata tgagaaacct tctctctcag cccagccggg ccccacggtt caggcaggag 781 agaacgtgac cttgtcctgt agctcctgga gctcctatga catctaccat ctgtccaggg 841 aaggggaggc ccatgaacgt aggctccgtg cagtgcccaa ggtcaacaga acattccagg 901 cagactttcc tctgggccct gccacccacg gagggaccta cagatgcttc ggctctttcc 961 gtgccctgcc ctgcgtgtgg tcaaactcaa gtgacccact gcttgtttct gtcacaggaa 1021 acccttcaag tagttggcct tcacccacag aaccaagctc caaatctggt atctgcagac 1081 acctgcatgt tctgattggg acctcagtgg tcatcttcct cttcatcctc ctcctcttct 1141 ttctccttta tcgctggtgc tccaacaaaa agaatgctgc tgtaatggac caagagcctg 1201 cgggggacag aacagtgaat aggcaggact ctgatgaaca agaccctcag gaggtgacgt 1261 acgcacagtt ggatcactgc gttttcatac agagaaaaat cagtcgccct tctcagaggc 1321 ccaagacacc cctaacagat accagcgtgt acacggaact tccaaatgct gagcccagat 1381 ccaaagttgt ctcctgccca cgagcaccac agtcaggtct tgagggggtt ttcttgccaa 1441 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 1501 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta